CB610955

Overview
NameCB610955
Unique NameCB610955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 107/151 (70.86%), Postives = 118/151 (78.15%), Query Frame = 3
Query:  156 MEPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGXXXXXXXXXXXXXXXXXXXXXXXNGGAAGP-PKQPD 605
            M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINLVSSESN+VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK ETMQD+ +  KW+ G                       NGG + P P+ P+
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPE 151          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.698e-28
Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = 3
Query:  186 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSN 497
            +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C RE KRTIA EHV+KAL  LGF +Y ++V   Y++HKLE    S    K+ N
Sbjct:    8 EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFEN 111          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe GN=ncb2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  177 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKW 491
            G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C +E K+TIA EH++KALE L F EYI E      +HK +      K  K+
Sbjct:    4 GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKF 108          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 452
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 452
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 452
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 47/88 (53.41%), Postives = 71/88 (80.68%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 452
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NC2B_DROME (Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 452
            ++ +LP+A++ KIIKE++P  VRVA ++++L++ CC EFI+L+SSE+NEVC+  +K+TI  EHVL+ALE LGF +Y +E  A     K
Sbjct:   16 DELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCK 102          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NCB2_YEAST (Negative cofactor 2 complex subunit beta OS=Saccharomyces cerevisiae GN=NCB2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 41/99 (41.41%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  189 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI---EEVYAAYE-QHKLETMQDS 473
            ++ SLPKAT+ K+I E+L  D+   +DA++++I   +EFI ++SS ++E+   E K+TIAPEHV+KALE L + E+I   EE+   ++   K++  +DS
Sbjct:    6 DNVSLPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS 104          
BLAST of CB610955 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 38/108 (35.19%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  177 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNG 500
            G  ++D  LP A +++I+K+ +PA+ ++A+DA++ L EC  EFI+ V+SE+++ C +E ++TI  E +L A+  LGF EY++ +     +++ E + DS    K  +G
Sbjct:   31 GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYR-EVIGDSKLSSKAGDG 137          
The following BLAST results are available for this feature:
BLAST of CB610955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NC2B_ARATH2.474e-5370.86Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI4.698e-2853.85Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_SCHPO9.169e-2449.52Negative cofactor 2 complex subunit beta OS=Schizo... [more]
NC2B_RAT2.258e-2253.41Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE2.258e-2253.41Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN2.258e-2253.41Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK2.258e-2253.41Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_DROME2.584e-1850.00Protein Dr1 OS=Drosophila melanogaster GN=NC2beta ... [more]
NCB2_YEAST3.861e-1441.41Negative cofactor 2 complex subunit beta OS=Saccha... [more]
NFYB2_ORYSJ4.269e-1335.19Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_C05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610955 ID=CB610955; Name=CB610955; organism=Citrus sinensis; type=EST; length=726bp
GGGGGACTTTGTTTGATAAATCCAGTATATATCAACGATGTCCCTTCCAC
TGAATCGTCCCTCGACTCGGATCTTAACTCGACTGACTCGTTTTCTGCAT
CCTTAGTTGATTCTCTCGTTTCTCTGTTCGACTCGGTTCGGTGACTCGAT
TAAAGATGGAGCCGATGGATATTGTTGGAAAGTCAAAGGAGGACGCATCG
CTCCCAAAAGCTACAATGACTAAAATTATAAAAGAGATGTTGCCAGCAGA
TGTACGTGTTGCAAGAGATGCTCAAGATCTTTTGATTGAGTGTTGCGTAG
AGTTTATAAATCTTGTTTCCTCTGAGTCCAATGAAGTTTGCAGCAGGGAG
GATAAAAGAACAATTGCTCCCGAGCATGTACTCAAGGCTTTGGAGGTTCT
TGGGTTTGGTGAGTACATCGAGGAGGTCTATGCTGCATACGAGCAACACA
AGCTTGAGACTATGCAGGACTCGTTGAAAGGTGGCAAATGGAGCAATGGG
GCCGAGATGACGGAGGAAGAAGCAGCGGCTGAGCAGCAGAGAATGTTTGC
TGAGGCACGTGCACGAATGAACGGTGGAGCCGCTGGCCCTCCCAAGCAAC
CGGACGATAACCCAAGTTTAGAGAGCTAACTAACTATAGGACTTTTAATG
ATCTCCAGCCATAAGGAAGCATCCTTGACTCTTTCTGTTCNGGATCTAGT
CTCTTATATTATGTACAAAAAGCCTT
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