CB610960

Overview
NameCB610960
Unique NameCB610960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11535 contig Csv1_Contig11535:90..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.489e-33
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 283
            +F E LK LEG LGD+P+FGG++FG+VD++LI FY WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  129 DFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.489e-33
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 283
            +F E LK LEG LGDKP+FGG++FG+VD++LI +Y WFY YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  129 DFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.023e-29
Identity = 51/92 (55.43%), Postives = 72/92 (78.26%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 280
            EF E+LKTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:  128 EFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.980e-26
Identity = 48/92 (52.17%), Postives = 70/92 (76.09%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 280
            EF E+ KTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  F++EAEC K + W + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:  128 EFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.400e-25
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 274
            E   + K LE  L DKPF+G D FG+VDL LI F  WFYTYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:  127 ELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.014e-21
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 283
            E  E+L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++VAK LP  +KV++FV  ++   G+E
Sbjct:  136 EMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of CB610960 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 2
Query:    5 EFFEVLKTLEGQLGDKPFFGGDN---FGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 283
            E  E+L+TLE +LGD+ FFGG      G+VD++L+PF  WFY+YE CG F+VE   P+  AW +RC + ++V K LP  +KV++FV  ++   G+E
Sbjct:  136 EMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKKKYGVE 231          
The following BLAST results are available for this feature:
BLAST of CB610960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GSTXC_TOBAC7.489e-3364.52Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC7.489e-3364.52Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_TOBAC5.023e-2955.43Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL3.980e-2652.17Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTX3_SOYBN4.400e-2555.56Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTU1_ORYSI1.014e-2146.88Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSJ2.952e-2145.83Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
back to top
Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_A06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610960 ID=CB610960; Name=CB610960; organism=Citrus sinensis; type=EST; length=526bp
GGGGGAGTTCTTTGAAGTCCTGAAGACTTTGGAAGGGCAGCTTGGAGACA
AGCCTTTCTTCGGAGGAGACAATTTTGGGTATGTGGATTTAAGTTTGATC
CCATTCTATTGTTGGTTTTACACGTATGAGACATGTGGAAAGTTCAACGT
CGAGGCTGAGTGCCCCAAGTTCATAGCTTGGGTGAAGAGATGCTTGCAGA
GGGAGACTGTTGCCAAGGCACTTCCTGATGGGAAGAAAGTGTTTGAATTT
GTTTCAGCGATGAGGACAAATTTAGGATTGGAGTAGAGAGAAAAAGGGAC
ATACCTTGGAGCTGAGAATAAGTCAAGCAGCGCAATCGTGCAGCCTGCTT
ATTCTTTAGGTGGTTGATGTTGGTTTGGCTTGTGATGGTTGTTTTCCTAT
TGTGTTTTTGTATTCGGATTGTTGTATTTCCCTAGTAAAAATAAGCTCCA
ATAATCCAATAAAGGACAATTAATTTTGTCCCCTACTGTTGTTATCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
back to top