CF417073

Overview
NameCF417073
Unique NameCF417073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 403
            CGVQITR  +++ LS  +EY+ S DATI GSRNG  PIFLWY L++KG+   Q++   C+ NA YLKDRLL+AGIS MLN+ S TVVFERP D +F+RRW L C   +AHVV+MP +T + +D F  +L++ R+
Sbjct:  250 CGVQITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERN 382          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 391
            CG+ + +   ++ +S  V+Y++SRD TI GSRNGH+ +F+W  +    +  +Q +V +CL  A Y   R  + GI+A  N+ S+TVVF  P  E   R+  LA  G++AH++ MP++   DKLD  + ++I
Sbjct:  241 CGIVLAKRHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELI 391
            CG+ + +   ++ +S  V+Y++SRD TI GSRNGH+ +F+W  +       +Q +V+ CL  A Y   RL  AGI A  N+ S+TVVF  P  E   R+  LA  G++AH+V MP++ +  +LD  ++++I
Sbjct:  241 CGIVLAKQHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSNTVVFPCP-SEPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVI 370          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 403
            CGV ++   H+  +  N++Y+ S D T+ GSRN   PI LWY +   G +G ++  Q+C R A Y  D L   G+SA  N  + TVV   P ++    +WQ+A Q +++H+VV P  T  + D  + E I NR+
Sbjct:  238 CGVVLSHKLHVQRVMRNIDYIGSSDTTLSGSRNAFTPIILWYAIRSLGIEGIKQTFQQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPGTTKQQADALI-ETISNRN 368          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.669e-17
Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 373
            CG+ + + E+++ +S  ++Y+++ D TI GSRNGH P+ LW  +     + +++ + + L  A Y  DR+  AGI+A  N+ S TVVF  P  E   R   LA  G++AH++     +  V IDKL D
Sbjct:  241 CGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 41/131 (31.30%), Postives = 78/131 (59.54%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 391
            CG+ + + ++++ +S  ++Y+++ D TI GSRNGH P+ +W  +    ++ +++ +++ L  A Y  DR   AGI A  N+ S TVVF  P  E   ++  LA  G+IAH++    ++   K+D  ++++I
Sbjct:  241 CGIVVAKKKNVDRISVEIDYISAHDKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVI 370          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNELI 391
            CG+ + + E++  +S +V+Y+ + D TI GSRNGH P+ +W  L       +++ V+  L +A Y  DRL  AGI A  ++ S TVVF  P      R++ LA  G+ AH++  P+   DK  +D  ++E+I
Sbjct:  241 CGIVVAKRENVERISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRLQAAGIDAWRHDNSITVVFPCP-SSRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDEVI 370          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 349
            CG+ + +  ++  +S  V+Y+ + D TI GSRNGH P+ +W  L    +  ++  ++  L  A Y  DR   +GI A  NE S TVVF  P  E    ++ LA  GN AH++  P+
Sbjct:  242 CGIVVAKRNNVARISVEVDYIRAHDKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCLATSGNSAHLITTPH 356          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337
            CG+ + + +++  +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337
            CG+ + + +++  +S +V+Y+++RD TI GSRNGH  + +W  +  +     ++ +Q CL+ A Y  DR    GI A  N  S TVVF  P  E   ++  LA  GN+AH++
Sbjct:  241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351          
The following BLAST results are available for this feature:
BLAST of CF417073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCHS_SOLLC9.667e-3955.22Histidine decarboxylase OS=Solanum lycopersicum GN... [more]
DCHS_VIBAN2.025e-2037.40Histidine decarboxylase OS=Vibrio anguillarum GN=h... [more]
DCHS_VIBHB5.892e-2038.17Histidine decarboxylase OS=Vibrio harveyi (strain ... [more]
DCHS_RHILO2.476e-1836.57Histidine decarboxylase OS=Rhizobium loti GN=hdc P... [more]
DCHS_MORMO4.669e-1735.94Histidine decarboxylase OS=Morganella morganii GN=... [more]
DCHS_KLEPL1.774e-1631.30Histidine decarboxylase OS=Klebsiella planticola G... [more]
DCHS_PSEE42.317e-1635.61Histidine decarboxylase OS=Pseudomonas entomophila... [more]
DCHS_PSEFL1.502e-1535.34Histidine decarboxylase OS=Pseudomonas fluorescens... [more]
DCHS_ACIBY3.346e-1535.71Histidine decarboxylase OS=Acinetobacter baumannii... [more]
DCHS_ACIBC3.346e-1535.71Histidine decarboxylase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-003 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A6 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417073 ID=CF417073; Name=CF417073; organism=Citrus sinensis; type=EST; length=611bp
TTGTGGTGTTCAAATAACGAGAATGGAACACATCAATGTCCTTTCAAGCA
ATGTAGAGTACCTTGCTTCAAGAGATGCCACAATCATGGGAAGCCGAAAT
GGCCATGCTCCTATCTTCCTCTGGTACACCCTCAATAGAAAAGGTTACAA
AGGGTTCCAGAAAGAAGTCCAGAAGTGTCTTAGAAATGCTCACTACTTGA
AGGACCGCCTTCTTGATGCTGGGATTAGTGCCATGTTGAATGAGCTTAGC
AGCACCGTTGTGTTTGAGCGTCCTCAAGATGAAGAGTTTGTCCGTAGGTG
GCAGCTTGCTTGCCAAGGTAACATTGCACATGTAGTAGTGATGCCCAATG
TCACAATTGACAAGCTGGATGATTTCTTGAACGAGTTAATAGAAAATCGC
TCAACATGGGTATGAGGATGGAAAAAGACAGCCTCCTTGCATTGCAGCAG
NATATAGGAAGTGAGAATTNGTGTTTCTGCTGCGCACAAGTGAAATCATT
ATGGCTTAGGATTGTTTCCNNTTGTTGTCTTGNTGTAGCAGAATTCTTTA
TTTGTAATGGAATCAGAATTTGTATCGGCAACATTTTCCAGTTTCTATAA
TGTTTCATATT
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