CF417073
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_SOLLC (Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39 Identity = 74/134 (55.22%), Postives = 98/134 (73.13%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 403 CGVQITR +++ LS +EY+ S DATI GSRNG PIFLWY L++KG+ Q++ C+ NA YLKDRLL+AGIS MLN+ S TVVFERP D +F+RRW L C +AHVV+MP +T + +D F +L++ R+ Sbjct: 250 CGVQITRRSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFKDLMQERN 382
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_VIBAN (Histidine decarboxylase OS=Vibrio anguillarum GN=hdc PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20 Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 391 CG+ + + ++ +S V+Y++SRD TI GSRNGH+ +F+W + + +Q +V +CL A Y R + GI+A N+ S+TVVF P E R+ LA G++AH++ MP++ DKLD + ++I Sbjct: 241 CGIVLAKRHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWRNKNSNTVVFPCP-SEPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_VIBHB (Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20 Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELI 391 CG+ + + ++ +S V+Y++SRD TI GSRNGH+ +F+W + +Q +V+ CL A Y RL AGI A N+ S+TVVF P E R+ LA G++AH+V MP++ + +LD ++++I Sbjct: 241 CGIVLAKQHMVDQISVEVDYISSRDQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSNTVVFPCP-SEPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVI 370
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_RHILO (Histidine decarboxylase OS=Rhizobium loti GN=hdc PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18 Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 403 CGV ++ H+ + N++Y+ S D T+ GSRN PI LWY + G +G ++ Q+C R A Y D L G+SA N + TVV P ++ +WQ+A Q +++H+VV P T + D + E I NR+ Sbjct: 238 CGVVLSHKLHVQRVMRNIDYIGSSDTTLSGSRNAFTPIILWYAIRSLGIEGIKQTFQQCERLAAYTADELNVRGVSAWRNPNALTVVLP-PVEDSIKTKWQIATQ-DVSHLVVTPGTTKQQADALI-ETISNRN 368
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_MORMO (Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 4.669e-17 Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 373 CG+ + + E+++ +S ++Y+++ D TI GSRNGH P+ LW + + +++ + + L A Y DR+ AGI+A N+ S TVVF P E R LA G++AH++ + V IDKL D Sbjct: 241 CGIVVAKKENVDRISVEIDYISAHDKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSITVVFPCP-SERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_KLEPL (Histidine decarboxylase OS=Klebsiella planticola GN=hdc PE=3 SV=4) HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16 Identity = 41/131 (31.30%), Postives = 78/131 (59.54%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 391 CG+ + + ++++ +S ++Y+++ D TI GSRNGH P+ +W + ++ +++ +++ L A Y DR AGI A N+ S TVVF P E ++ LA G+IAH++ ++ K+D ++++I Sbjct: 241 CGIVVAKKKNVDRISVEIDYISAHDKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSITVVFPCP-SEAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVI 370
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_PSEE4 (Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16 Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNELI 391 CG+ + + E++ +S +V+Y+ + D TI GSRNGH P+ +W L +++ V+ L +A Y DRL AGI A ++ S TVVF P R++ LA G+ AH++ P+ DK +D ++E+I Sbjct: 241 CGIVVAKRENVERISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRLQAAGIDAWRHDNSITVVFPCP-SSRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDEVI 370
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_PSEFL (Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.502e-15 Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 349 CG+ + + ++ +S V+Y+ + D TI GSRNGH P+ +W L + ++ ++ L A Y DR +GI A NE S TVVF P E ++ LA GN AH++ P+ Sbjct: 242 CGIVVAKRNNVARISVEVDYIRAHDKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSITVVFPCP-SERIATKYCLATSGNSAHLITTPH 356
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBY (Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337 CG+ + + +++ +S +V+Y+++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351
BLAST of CF417073 vs. ExPASy Swiss-Prot
Match: DCHS_ACIBC (Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15 Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 2 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVV 337 CG+ + + +++ +S +V+Y+++RD TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S TVVF P E ++ LA GN+AH++ Sbjct: 241 CGIVVAKRQNVERISVDVDYISTRDQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSITVVFPCP-SEHIWKKHYLATSGNMAHLI 351 The following BLAST results are available for this feature:
BLAST of CF417073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417073 ID=CF417073; Name=CF417073; organism=Citrus sinensis; type=EST; length=611bpback to top |