CF417075

Overview
NameCF417075
Unique NameCF417075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:41..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.622e-107
Identity = 104/117 (88.89%), Postives = 113/117 (96.58%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGG+LEDTELIYGI +DKDMSHPQMPK+IE+A IAILTCPFEPPKPKTKHKVDIDTVEKF+TLR+QEQ+YFD+MVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG  +
Sbjct:  210 KVGGKLEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVEL 326          

HSP 2 Score: 183.341 bits (464), Expect = 1.622e-107
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            GVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSFGTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYG G
Sbjct:  323 GVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGG 419          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.631e-104
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGG+LEDTEL+ GI VDKDMSHPQMPKRIE+A IAILTCPFEPPKPKTKHKVDIDTVEKFQTLR QEQKYFD+MVQKCKDVGATLVICQWGFDDEANHLLM R LPAVRWVGG  +
Sbjct:  210 KVGGKLEDTELVQGIIVDKDMSHPQMPKRIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVEL 326          

HSP 2 Score: 177.563 bits (449), Expect = 3.631e-104
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            GVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYG G
Sbjct:  323 GVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGG 419          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 3.049e-103
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGG+LEDTEL+ GI VDKDMSHPQMPKRI +A IAILTCPFEPPKPKTKHKVDIDTVEKFQTLR QEQKYFD+MVQKCKDVGATLVICQWGFDDEANHLLM R LPAVRWVGG  +
Sbjct:  210 KVGGKLEDTELVEGIIVDKDMSHPQMPKRIYDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVEL 326          

HSP 2 Score: 177.563 bits (449), Expect = 3.049e-103
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            GVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYG G
Sbjct:  323 GVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGG 419          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.084e-85
Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG  I
Sbjct:  214 KVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 330          

HSP 2 Score: 154.451 bits (389), Expect = 1.084e-85
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYG G
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 423          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.084e-85
Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG  I
Sbjct:  214 KVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 330          

HSP 2 Score: 154.451 bits (389), Expect = 1.084e-85
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYG G
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 423          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.137e-85
Identity = 80/117 (68.38%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT+LI G+ VDKD SHP+MPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG  I
Sbjct:  214 KVGGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 330          

HSP 2 Score: 154.451 bits (389), Expect = 3.137e-85
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYG G
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 423          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.612e-84
Identity = 79/117 (67.52%), Postives = 97/117 (82.91%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT+LI G+ VDKD SHPQMPK + NAKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+ + K+ GA L ICQWGFDDEANHLL+   LPAVRWVGG  I
Sbjct:  214 KVGGRLEDTKLIKGVIVDKDFSHPQMPKEVLNAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIAQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEI 330          

HSP 2 Score: 154.836 bits (390), Expect = 7.612e-84
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIATGGRIVPRF ELT EKLG AG+VRE SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYG G
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 423          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.891e-83
Identity = 78/117 (66.67%), Postives = 99/117 (84.62%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGGRLEDT+LI G+ VDKD SHPQMPK++ +AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+++ K+ GA L ICQWGFDDEANHLL+   LPAVRWVGG  I
Sbjct:  214 KVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEI 330          

HSP 2 Score: 152.91 bits (385), Expect = 4.891e-83
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIATGGRIVPRF ELT EKLG AG+V+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYG G
Sbjct:  327 GPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGG 423          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.085e-82
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGCRI 353
            KVGG ++DT+L+ G+ VDKDMSHPQMP RIENAKIAILTCPFEPPKPKTKHK+DI +V +F+ L+  E++ F +M++  KD GA LVICQWGFDDEANHLL+  NLPAVRWVGG  I
Sbjct:  216 KVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEI 332          

HSP 2 Score: 145.976 bits (367), Expect = 1.085e-82
Identity = 67/97 (69.07%), Postives = 85/97 (87.63%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G E+ELIAIAT GRIVPRF++L+ +KLG AG+VRE SFGTT+D++L IE CANSRAVT+F+RG NKM+++E KR++HDALCV RNLIR+N +VYG G
Sbjct:  329 GPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGG 425          
BLAST of CF417075 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 6.974e-79
Identity = 78/114 (68.42%), Postives = 93/114 (81.58%), Query Frame = 3
Query:    3 KVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGG 344
            K GG+LEDT+L+ GI +DK +SHPQMPK I++AKI +LTCPFEPPKPKTK+ ++I   E F+ L + EQKYF DMV+K K  GA LVICQWGFDDEANHLL+  NLPAVRWVGG
Sbjct:  210 KEGGKLEDTQLVKGIIIDKGISHPQMPKIIKDAKICLLTCPFEPPKPKTKNSIEITKAEDFKVLGEIEQKYFTDMVEKVKATGANLVICQWGFDDEANHLLLQNNLPAVRWVGG 323          

HSP 2 Score: 143.28 bits (360), Expect = 6.974e-79
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = 1
Query:  343 GVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGRG 633
            G++LE IA+ATGGRIV RF++++ +KLG+AGLVRE  FGTTQDR L IE C N+ AVTIF+RGGNKM++EE KRSIHDALCV RNLIR+N ++YG G
Sbjct:  323 GLDLEKIAMATGGRIVARFEDVSADKLGRAGLVREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGG 419          
The following BLAST results are available for this feature:
BLAST of CF417075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
TCPE_ARATH1.622e-10788.89T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA3.631e-10488.89T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA3.049e-10388.03T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MACFA1.084e-8569.23T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.084e-8569.23T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_PONAB3.137e-8568.38T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT7.612e-8467.52T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE4.891e-8366.67T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_SCHPO1.085e-8270.09T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_DICDI6.974e-7968.42T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-005 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_A8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417075 ID=CF417075; Name=CF417075; organism=Citrus sinensis; type=EST; length=639bp
GAAAAGTAGGGGGAAGGTTGGAGGACACTGAGCTAATATATGGAATTACT
GTTGACAAGGATATGAGCCACCCTCAGATGCCAAAACGAATTGAAAATGC
AAAAATTGCCATCTTGACCTGCCCCTTTGAGCCCCCTAAGCCAAAAACAA
AGCATAAGGTGGACATTGATACCGTGGAAAAGTTCCAGACTTTACGTCAG
CAAGAGCAAAAATACTTTGATGACATGGTTCAAAAGTGCAAGGATGTTGG
TGCTACCTTGGTCATCTGTCAATGGGGTTTCGATGATGAGGCTAATCACT
TATTAATGCACAGGAACCTGCCTGCTGTCCGCTGGGTTGGTGGGTGTAGA
ATTGGAGCTGATTGCCATAGCCACAGGTGGAAGAATTGTTCCAAGGTTTC
AGGAGTTGACACCAGAAAAACTTGGAAAGGCTGGTTTGGTTCGAGAAAAG
TCTTTTGGTACTACACAAGATAGAATGCTGTACATTGAACACTGTGCAAA
TTCTAGGGCTGTAACCATTTTTATCCGTGGAGGTAACAAAATGATGATAG
AGGAGACCAAGCGGAGCATACATGATGCCTTGTGTGTGGCTAGGAATCTG
ATTCGCAACAATTCTATTGTGTATGGGCGGGGGGTGCAG
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