CF417081

Overview
NameCF417081
Unique NameCF417081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:834..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417081 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.264e-15
Identity = 40/91 (43.96%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   37 PFVPTADDT-PV---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSD 291
            PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D
Sbjct:  238 PFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD 318

HSP 2 Score: 35.039 bits (79), Expect = 6.264e-15
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 2 
Query:  362 SLDAFLNGDNTQDGGNLMNLWSFDDFP 442
            S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  334 SIDSLLNLDGSQDVVSNMDLWSFDDMP 360
[Close]
BLAST of CF417081 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   70 YFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPM 333
            YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+
Sbjct:  270 YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPL 342
The following BLAST results are available for this feature:
BLAST of CF417081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ERF1_ORYSJ6.264e-1543.96Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH5.703e-1247.19Ethylene-responsive transcription factor RAP2-2 OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-011 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_B2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417081 ID=CF417081; Name=CF417081; organism=Citrus sinensis; type=EST; length=692bp
GGCTCCTTCCCTGATGATGGAGAACTAGGATTCAAACCCTTTGTGCCAAC
AGCTGATGATACTCCTGTGTACTTCAACTCTGACCAAGGCAGTAACTCCT
TTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGACTCCTGAA
ATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCTCAGTTTGT
GGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTCTGAGAATG
CTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTGATGAGCTTTTG
GCTTTTGACAATCAGGTGAAGTTCTTGCCAATGCCGTATCCTGGAAGGAA
GCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAACACCCAGGAT
GGTGGAAACTTGATGAACCTTTGGAGCTTTGATGACTTCCCTTCTACCTN
AGGGGGGAGTGTATTGAGCAAACTTTCATGTGCTTGCTAGTTTTGTAAAT
AAGGCTATATCTTTGAGGGACTGGTTGTCTATCTGTGTTGGGAGATGCAG
TGCTTAATTGTTGGACATGCTTAAGCCAAGCCATGGTGTGGAGATTGCTC
TCAGGGAGCTTTCAGTAGATTCTTAANTAATANGGGGGTTTANGGTNCCT
TTTAACCTATGAGACTTGAAACATTTTGAACATTTTTGCAAT
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