CF417090

Overview
NameCF417090
Unique NameCF417090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2086 contig Csv1_Contig2086:75..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417090 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.650e-40
Identity = 83/125 (66.40%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  130 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFN 501
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFN
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFN 128          
BLAST of CF417090 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  199 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFN 501
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFN
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFN 136          
BLAST of CF417090 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.641e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  181 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFN 501
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFN 111          
BLAST of CF417090 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  298 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 414
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of CF417090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH7.650e-4066.40Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.446e-3071.84Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU2.641e-2458.88Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA2.319e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-020 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417090 ID=CF417090; Name=CF417090; organism=Citrus sinensis; type=EST; length=657bp
CCGCTAAGCCTGTTCTATTTCTTGCAAAAATTTATCATAATCCAGGAACT
CAAAAACTCCATCATCCATCAAGGCATCAACCAGAACACAAAAAAGAAGG
AAAAAGAGGGGGAAAAAAGAAAAATGGCAGCCTCATCCTCCTTGTTCACA
CCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCCTCCACCATCTC
ATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAACCTCCCTCCCCA
AGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAG
CTGAGCACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTT
GGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAG
GCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGTTCGT
GCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTAA
CCATTGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATATTGTCGCTTAC
TACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGGGTT
GATTTTGNTATTTGTACTGTCTCTCTTTGTCTCTTTTAGTTTCTTAATTT
CTCAAGT
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