CF417092

Overview
NameCF417092
Unique NameCF417092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13658 contig Csv1_Contig13658:381..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417092 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.843e-33
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   12 FPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK---NLPELPTLMFEFIG-TQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWA 314
            FPT+ DAA  +   + +GIQ++ +ELLD+  ++ +N +      N  E PTL F+  G ++    E    V+KI S+HN T F FA D ++K ELW+ RK ALW+
Sbjct:  331 FPTVSDAASCSSHLIQAGIQLNAMELLDDNMMKIINQSGATSKDNWVESPTLFFKIGGRSEQIIQEVIKEVEKIASQHNNTKFEFATDEDSKLELWEARKVALWS 435          

HSP 2 Score: 53.1434 bits (126), Expect = 5.843e-33
Identity = 23/50 (46.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  355 DVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVXTI*SEQRR 504
            DV VP+S  A++I+ +K+E++AS L+ +++ HAGDGNFH      +EQR+
Sbjct:  453 DVAVPISKFADVINATKEEMNASGLLTSLVGHAGDGNFHAFIIYNTEQRK 502          

HSP 3 Score: 42.3578 bits (98), Expect = 5.843e-33
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 2
Query:  503 EDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGENE 610
            E R+ AE +   MV  A+  EGTCTGEHG+G G+ +
Sbjct:  499 EQRKTAETIVENMVKRAIDAEGTCTGEHGVGIGKRD 534          

HSP 4 Score: 31.5722 bits (70), Expect = 5.843e-33
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  591 LGQGKMKYLEKELGTGALETMKRIKVALDP 680
            +G GK  YL +E+G   +  M+++K+ALDP
Sbjct:  528 VGIGKRDYLLEEVGEDTVAVMRKLKLALDP 557          
BLAST of CF417092 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 8.813e-27
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 3
Query:    9 NFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK---NLPELPTLMFEFIGTQAYSHEQTLI--VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPS 335
            +F TIKDAA  A     SGI ++ +ELLDE  ++ +N +      +  E PT+ F+ IG ++ +    L+  V+ +   ++   F FA+D + K ELW+ RK ALW+    + S
Sbjct:  337 SFDTIKDAAACASNLTQSGIHLNAMELLDENMMKLINASESTDRCDWVEKPTMFFK-IGGRSPNIVNALVDEVKAVAQLNHCNSFQFAKDDDEKLELWEARKVALWSVLDADKS 449          

HSP 2 Score: 46.595 bits (109), Expect = 8.813e-27
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  355 DVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFH 471
            DV VP+S   ++I  +KK++ AS LI  ++ HAGDGNFH
Sbjct:  460 DVAVPVSQFDKVIHETKKDMQASKLINAIVGHAGDGNFH 498          

HSP 3 Score: 41.2022 bits (95), Expect = 8.813e-27
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 2
Query:  503 EDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGENE 610
            E+ +   +L   MV  AL+ EGTCTGEHG+G G+ E
Sbjct:  507 EEHETCSQLVDRMVKRALNAEGTCTGEHGVGIGKRE 542          

HSP 4 Score: 34.2686 bits (77), Expect = 8.813e-27
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  591 LGQGKMKYLEKELGTGALETMKRIKVALDP 680
            +G GK +YL +ELG   ++ M++IK+A+DP
Sbjct:  536 VGIGKREYLLEELGEAPVDLMRKIKLAIDP 565          
BLAST of CF417092 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 66/237 (27.85%), Postives = 116/237 (48.95%), Query Frame = 3
Query:    3 TCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISG-CMCSSFLPG-RVDIKVKERA*CITTDLHCNCSCR*W*LSHGDXYLI---------RAKKRTARKQNG*IDSWSILPCRWKEHVLVSMVLGQGKMKYLEKELGTGALETMKRIKVALDP 680
            TC FP+++ A D  +  + + + V+R+E LD+V + A N  +  N P  PTL  EF G+Q    EQ    + I  ++ G+ F +A++ E + ELW  R  A +A  A+ P  +A  +  C+  S LP   V+ K + +A  +T  +  +       +  G+ + I           ++  A  +N    + ++      EH      +G GK + L++E+G   +ETM+++K  LDP
Sbjct:  250 TCAFPSVQAAVDSTVQILQAAVPVARIEFLDDVMMDACNRHSKLNCPVAPTLFLEFHGSQQTLAEQLQRTEAITQDNGGSHFSWAKEAEKRNELWAARHNAWYAALALSPGSKAYSTDVCVPISRLPEILVETKEEIKASKLTGAIVGH-------VGDGNFHCILLVDPDDAEEQRRVKAFAENLGRRALALGGTCTGEH-----GIGLGKRQLLQEEVGPVGVETMRQLKNTLDP 474          
BLAST of CF417092 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 63/233 (27.04%), Postives = 114/233 (48.93%), Query Frame = 3
Query:    3 TCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISG-CMCSSFLPGRVDIKVKE--RA*CITTDLHCNCSCR*W*LSHGDXYLIRAKKRTARKQNG*IDSWSILPCRWKEHVLVSMV----LGQGKMKYLEKELGTGALETMKRIKVALDP 680
            TC FP+++ A D  +  + + + V+R+E LDEV + A N  +  N    PTL  EF G+Q    EQ    ++IV ++  +DF +A++ E +  LW  R  A +A  A  P  +   +  C+  S LP  + ++ KE   A  +T  +  +       +  G+ + I        ++ G + +++    R    +  +      +G GK + L++E+G   +ETM+++K  LDP
Sbjct:  273 TCAFPSVQAAVDSTVHILQAAVPVARIEFLDEVMMDACNRYSKLNCLVAPTLFLEFHGSQQALEEQLQRTEEIVQQNGASDFSWAKEAEERSRLWTARHNAWYAALATRPGCKGYSTDVCVPISRLP-EIVVQTKEDLNASGLTGSIVGH-------VGDGNFHCILLVNPDDAEELGRVKAFAEQLGRRALALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDP 497          
The following BLAST results are available for this feature:
BLAST of CF417092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DLD1_KLULA5.843e-3340.00D-lactate dehydrogenase [cytochrome], mitochondria... [more]
DLD1_YEAST8.813e-2734.21D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
LDHD_MOUSE1.425e-1527.85Probable D-lactate dehydrogenase, mitochondrial OS... [more]
LDHD_HUMAN1.862e-1527.04Probable D-lactate dehydrogenase, mitochondrial OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-022 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_C2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417092 ID=CF417092; Name=CF417092; organism=Citrus sinensis; type=EST; length=687bp
CAACATGTAACTTCCCAACTATTAAGGATGCAGCAGATGTAGCTATTGCT
ACTATGCTGTCTGGCATACAGGTGTCAAGGGTGGAGCTCCTGGATGAAGT
TCAAGTGAGGGCTGTCAATATTGCTAATGGGAAGAACTTGCCTGAACTTC
CAACTTTGATGTTTGAATTTATAGGCACTCAGGCATATTCACATGAGCAG
ACACTAATTGTTCAGAAGATTGTGTCTGAGCACAATGGTACTGATTTTAT
TTTTGCGGAAGATCCTGAAGCTAAAAAGGAACTCTGGAAGATGAGAAAGG
AGGCACTCTGGGCTTGCTTTGCAATGGAGCCGAGTTTTGAAGCAATGATT
TCTGGATGTATGTGTTCCTCTTTCTTGCCTGGCAGAGTTGATATCAAGGT
CAAAGAAAGAGCTTGATGCATCACCACTGATTTGCACTGTAATTGCTCAT
GCCGGTGATGGTAACTTTCACACGGTGATNACTATTTGATCCGAGCAAAG
AAGAGGACCGCCAGGAAGCAGAACGGTTAAATCGATTCATGGTCCATACT
GCCTTGTCGATGGAAGGAACATGTACTGGTGAGCATGGTATTGGGACAGG
GGAAAATGAAGTATCTAGAAAAGGAGCTAGGCACTGGAGCATTGGAGACG
ATGAAAAGAATCAAAGTAGCACTAGACCCCAACAACA
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