CF417123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_ARATH (Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 1.235e-72 Identity = 148/227 (65.20%), Postives = 172/227 (75.77%), Query Frame = 1 Query: 1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPE-RIGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPVCC-GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLEQ GGSIIGGTFKAIQE+ APK RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLSWKLSG+ KL++G Y+LTYETP+ + ++ V+ H+ S ++ + AA ALS+ YYPPV + + + ++ ++D KG +QGVETLGTIYSSSLFPNRA Sbjct: 194 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSE--SAANALSKLYYPPVAAVSISYPKEAIRTECLIDG--ELKGFGQLHPRTQGVETLGTIYSSSLFPNRA 416
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_TOBAC (Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1) HSP 1 Score: 266.544 bits (680), Expect = 8.854e-71 Identity = 144/227 (63.44%), Postives = 168/227 (74.01%), Query Frame = 1 Query: 1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPER-IGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPV-CCGVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675 VE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLE+TGGSIIGGTFKAI+E++ PK PRDPRLPKPKGQTVGSFRKGL MLP+AIS RLGSK+KLSWKLS + K + G Y LTYETPE + + V+ ++ S ++ + AA ALS FYYPPV + + + +R++D KG +QGVETLGTIYSSSLFPNRA Sbjct: 205 VEQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRPLSV--AAADALSNFYYPPVGAVTITYPQEAIRDERLVDG--ELKGFGQLHPRTQGVETLGTIYSSSLFPNRA 427
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_ORYSJ (Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68 Identity = 142/227 (62.56%), Postives = 164/227 (72.25%), Query Frame = 1 Query: 1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPER-IGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPVCC-GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675 VE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VW+LE TGGSIIGGT K IQE+ K PK PRDPRLP PKGQTV SFRKGLTMLP+AI+ RLGSKVKLSWKL+ + K DN Y+L YETPE + A+ V+ ++ S ++ + AA ALS FYYPPV V + + + ++D +G SQGVETLGTIYSSSLFPNRA Sbjct: 193 VEDFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRPLSS--DAADALSIFYYPPVAAVTVSYPKEAIRKECLIDG--ELQGFGQLHPRSQGVETLGTIYSSSLFPNRA 415
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOCM_SPIOL (Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13 Identity = 66/235 (28.09%), Postives = 106/235 (45.11%), Query Frame = 1 Query: 1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDNGEYSLTYETPERIGFSAEPEVLL*QFHLMSLVVYYVH-----FL*XAAGALSQFYYPPVCC----GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675 V EF R+ G E + LI+PF +G GDP LSM+ AF +W +E GS+I G ++ K + KP+ + SF+ G+ L + I K G ++KL ++ + NG SLT E S + Q + +V ++ + S + P V C + K++N R L+ + + L G++TLGT++SS +FP+RA Sbjct: 183 VAEFFERHFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKLQSEVLSLSYSHNG--SLTSENWSVSSMS--NSTIQDQPYDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVIITTFKKTNVKRPLEGFGV---LVPSNEQHNGLKTLGTLFSSMMFPDRA 410 The following BLAST results are available for this feature:
BLAST of CF417123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417123 ID=CF417123; Name=CF417123; organism=Citrus sinensis; type=EST; length=676bpback to top |