CF417123

Overview
NameCF417123
Unique NameCF417123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8290 contig Csv1_Contig8290:656..1325. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_ARATH (Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.235e-72
Identity = 148/227 (65.20%), Postives = 172/227 (75.77%), Query Frame = 1
Query:    1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPE-RIGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPVCC-GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675
            VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLEQ GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLPEAIS RLGSKVKLSWKLSG+ KL++G Y+LTYETP+  +   ++  V+    H+ S ++  +     AA ALS+ YYPPV    + +  +   ++ ++D     KG       +QGVETLGTIYSSSLFPNRA
Sbjct:  194 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLRPLSE--SAANALSKLYYPPVAAVSISYPKEAIRTECLIDG--ELKGFGQLHPRTQGVETLGTIYSSSLFPNRA 416          
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_TOBAC (Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.854e-71
Identity = 144/227 (63.44%), Postives = 168/227 (74.01%), Query Frame = 1
Query:    1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPER-IGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPV-CCGVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675
            VE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VWKLE+TGGSIIGGTFKAI+E++  PK PRDPRLPKPKGQTVGSFRKGL MLP+AIS RLGSK+KLSWKLS + K + G Y LTYETPE  +   +   V+    ++ S ++  +     AA ALS FYYPPV    + +  +    +R++D     KG       +QGVETLGTIYSSSLFPNRA
Sbjct:  205 VEQFVRRNLGGEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILRPLSV--AAADALSNFYYPPVGAVTITYPQEAIRDERLVDG--ELKGFGQLHPRTQGVETLGTIYSSSLFPNRA 427          
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOC_ORYSJ (Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.162e-68
Identity = 142/227 (62.56%), Postives = 164/227 (72.25%), Query Frame = 1
Query:    1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDNGEYSLTYETPER-IGFSAEPEVLL*QFHLMSLVVYYVHFL*XAAGALSQFYYPPVCC-GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675
            VE+FVRRNLG EVFERLIEPFCSGVYAGDPSKLSMKAAFG VW+LE TGGSIIGGT K IQE+ K PK PRDPRLP PKGQTV SFRKGLTMLP+AI+ RLGSKVKLSWKL+ + K DN  Y+L YETPE  +   A+  V+    ++ S ++  +     AA ALS FYYPPV    V +  +    + ++D     +G       SQGVETLGTIYSSSLFPNRA
Sbjct:  193 VEDFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLPDAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILRPLSS--DAADALSIFYYPPVAAVTVSYPKEAIRKECLIDG--ELQGFGQLHPRSQGVETLGTIYSSSLFPNRA 415          
BLAST of CF417123 vs. ExPASy Swiss-Prot
Match: PPOCM_SPIOL (Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 66/235 (28.09%), Postives = 106/235 (45.11%), Query Frame = 1
Query:    1 VEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGNVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGVKKLDNGEYSLTYETPERIGFSAEPEVLL*QFHLMSLVVYYVH-----FL*XAAGALSQFYYPPVCC----GVCFLSKRSNSDRVLDRW*IXKGLANCIHGSQGVETLGTIYSSSLFPNRA 675
            V EF  R+ G E  + LI+PF +G   GDP  LSM+ AF  +W +E   GS+I G  ++     K     +     KP+ +   SF+ G+  L + I K  G  ++KL  ++  +    NG  SLT E       S     +  Q +   +V   ++      +       S  + P V C     +    K++N  R L+ + +   L        G++TLGT++SS +FP+RA
Sbjct:  183 VAEFFERHFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQGGMQTLVDTICKEFGEDELKLQSEVLSLSYSHNG--SLTSENWSVSSMS--NSTIQDQPYDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVIITTFKKTNVKRPLEGFGV---LVPSNEQHNGLKTLGTLFSSMMFPDRA 410          
The following BLAST results are available for this feature:
BLAST of CF417123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPOC_ARATH1.235e-7265.20Protoporphyrinogen oxidase, chloroplastic OS=Arabi... [more]
PPOC_TOBAC8.854e-7163.44Protoporphyrinogen oxidase, chloroplastic OS=Nicot... [more]
PPOC_ORYSJ9.162e-6862.56Protoporphyrinogen oxidase, chloroplastic OS=Oryza... [more]
PPOCM_SPIOL8.423e-1328.09Protoporphyrinogen oxidase, chloroplastic/mitochon... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-053 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417123 ID=CF417123; Name=CF417123; organism=Citrus sinensis; type=EST; length=676bp
GTTGAGGAGTTTGTGCGGCGTAACCTTGGTGATGAGGTTTTCGAGCGTCT
AATTGAGCCATTTTGTTCAGGGGTTTATGCAGGAGATCCTTCAAAACTAA
GCATGAAAGCAGCATTTGGAAACGTTTGGAAACTGGAGCAGACTGGTGGC
AGTATCATTGGTGGAACTTTTAAGGCAATCCAGGAAAAAAATAAAGCTCC
TAAGCAACCTCGAGACCCGCGTCTACCAAAGCCAAAGGGCCAAACAGTTG
GATCTTTTAGGAAGGGACTTACTATGCTGCCAGAGGCAATATCTAAAAGG
TTAGGTAGCAAAGTCAAATTATCTTGGAAGCTTTCAGGGGTCAAGAAATT
GGATAACGGAGAGTATAGTTTGACTTATGAAACACCAGAAAGGATTGGTT
TCTCTGCGGAGCCAGAAGTGTTGTTATGACAGTTCCATCTTATGTCGCTA
GTAGTCTACTACGTCCACTTTCTGTAGNATGCTGCCGGTGCACTCTCACA
ATTTTACTACCCACCAGTTTGCTGCGGTGTCTGTTTCTTATCCAAAAGAA
GCAATTCGGACAGAGTGCTTGATAGATGGTGAATTNAAAAGGGTTTGGCC
AATTGCATCCACGGNAGCCAAGGGGTGGAAACATTGGGAACAATATATAG
CTCATCACTTTTTCCCAACCGAGCAC
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