CF417124

Overview
NameCF417124
Unique NameCF417124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417124_ssr25 microsatellite CF417124_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CF417124 vs. ExPASy Swiss-Prot
Match: SFT2B_HUMAN (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.770e-13
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:  284 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDP 481
            +L+   R+ GF  CF++GI C+LL  ++ + P K    F + +TFGN+ S+GST FL+GP +Q+  M +P
Sbjct:   27 SLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKGLHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEP 96

HSP 2 Score: 31.5722 bits (70), Expect = 1.770e-13
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  583 ILEFGALIWYSLSYIPFAR 639
            IL+  AL WYSLS+IPFAR
Sbjct:  130 ILQSLALTWYSLSFIPFAR 148
[Close]
BLAST of CF417124 vs. ExPASy Swiss-Prot
Match: SFT2B_RAT (Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.049e-13
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 2 
Query:  200 GMDVEDEESAVENDSNSFAFIEDFNRQCTLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK--FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDP 481
            G D ED     E   +S           +L+   R+ GF +CF++GI C+LL  L+ +   K  F + +T GN+ S+GST FL+GP +Q+  M +P
Sbjct:   10 GQDTEDRSGLSEVVESS-----------SLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKGLFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEP 94

HSP 2 Score: 31.9574 bits (71), Expect = 5.049e-13
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  583 ILEFGALIWYSLSYIPFAR 639
            IL+  AL WYSLSYIP+AR
Sbjct:  127 ILQSLALTWYSLSYIPYAR 145
[Close]
BLAST of CF417124 vs. ExPASy Swiss-Prot
Match: SFT2B_MOUSE (Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 6.551e-13
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:  284 TLTTKQRLYGFAICFSVGIFCTLLSLLVFFNPIK----FGITFTFGNLLSLGSTAFLIGPKRQVTMMLDP 481
            +L+   R+ GF  CF++GI C++L  L+ + P K    F + +T GN++S+GST FL+GP +Q+  M +P
Sbjct:   27 SLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEP 96

HSP 2 Score: 31.9574 bits (71), Expect = 6.551e-13
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  583 ILEFGALIWYSLSYIPFAR 639
            IL+  AL WYSLSYIP+AR
Sbjct:  129 ILQSLALTWYSLSYIPYAR 147
The following BLAST results are available for this feature:
BLAST of CF417124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SFT2B_HUMAN1.770e-1341.43Vesicle transport protein SFT2B OS=Homo sapiens GN... [more]
SFT2B_RAT5.049e-1335.42Vesicle transport protein SFT2B OS=Rattus norvegic... [more]
SFT2B_MOUSE6.551e-1340.00Vesicle transport protein SFT2B OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-054 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F3 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417124 ID=CF417124; Name=CF417124; organism=Citrus sinensis; type=EST; length=645bp
ATATCATCTTTCTAAATTCTAATTAGCAGCAGCAGCAGGTGCTTCGTTGC
TTTCAATTTGTAGAATTTGCCGTAAATCAGAAGTGAGCATTACCAATAGC
AACAAATTGACATTGAGTTATCACGGATCCAGCTAAAAATAGAGAAAGTG
AAAATGGAGAAGATGAATCATGCGTTTGAGAAAATGAAGATGCTAGTTGG
GAATGGATGTTGAAGACGAAGAATCAGCCGTAGAAAACGACAGTAACTCT
TTCGCTTTCATCGAAGACTTCAATCGCCAATGCACTTTAACCACTAAGCA
GAGGTTGTATGGTTTCGCTATCTGCTTCTCTGTCGGCATATTCTGTACAC
TATTGTCATTACTTGTTTTCTTTAATCCAATCAAGTTCGGAATCACATTC
ACATTTGGGAATTTGCTTTCACTCGGAAGCACAGCATTCCTCATAGGCCC
AAAACGACAAGTGACAATGATGCTTGATCCTGCTCGTATTTACGCAACAG
CTATATATATTGCAAGGTATGATTATTGCCCTGTTTTCTGCTCTCTATGT
TCATAACAAGTTATTAACACTTTTGGCGCTGNATTTTAGAGTTCGGAGCN
CTAATTTGGTATAGCTTGAGCTATATCCCATTTGCAAGGGCCATG
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