CF417127

Overview
NameCF417127
Unique NameCF417127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1549 contig Csv1_Contig1549:125..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.275e-72
Identity = 136/165 (82.42%), Postives = 148/165 (89.70%), Query Frame = 1
Query:    7 QLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSIK 501
            Q+WETLKE ITAYTGLSPAAFFTV+AL +A+Y V+SG F S + H + RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVK G+I+
Sbjct:    4 QIWETLKETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVH-RPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQ 167          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 3.399e-68
Identity = 130/183 (71.04%), Postives = 147/183 (80.33%), Query Frame = 1
Query:    1 ALQLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGS---SDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSIKSTVPVTDGASSGE 540
            AL+LW+TLKEAI AYTGLSP  FFT +AL +AIY V+SG F S     N HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY K G++K      + AS  E
Sbjct:    2 ALELWQTLKEAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSE 184          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  208 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSIKS 504
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY   G + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.977e-19
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:  190 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKXGSIKSTVPVTDGA 528
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY   G     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  190 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKXGSIKSTVPVTDGA 528
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY   G     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  178 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EP P P ++  + T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY   G +
Sbjct:   61 EPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   55 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY   G +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   55 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY   G +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  190 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKXGSIKSTVPVTDGA 528
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D +   + +KY   G     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of CF417127 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 7.947e-17
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:  178 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKXGSI 498
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY   G +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
The following BLAST results are available for this feature:
BLAST of CF417127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH2.275e-7282.42Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH3.399e-6871.04Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH7.420e-2349.49Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT4.977e-1944.74Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE5.503e-1842.98Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT3.567e-1742.34Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG4.659e-1732.45Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN4.659e-1732.45Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN4.659e-1741.23Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_MOUSE7.947e-1741.44Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-057 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_F7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417127 ID=CF417127; Name=CF417127; organism=Citrus sinensis; type=EST; length=542bp
GCTCTGCAACTATGGGAGACTCTAAAGGAGGCGATAACAGCGTACACGGG
GCTCTCCCCGGCGGCGTTTTTTACAGTTGTTGCGTTGCTGTGGGCCATAT
ACTATGTTCTGTCGGGAATGTTTGGTTCGTCCGATAATCATCATCAGCAG
AGATCGAGGGAGTACGAGGAACAGATGGAGCCTCTGCCACCGCCTGTTCA
GCTAGGCGAGATTACCGAGGAGGAGCTCAAACAGTACGATGGCTCCGATT
CCAAAAAGCCCCTTCTCATGGCCATCAAGAGCCAGATCTACGATGTCTCT
CAGAGCAGGATGTTTTATGGACCTGGTGGGCCATATGCGTTGTTTGCTGG
AAAGGATGCTAGCAGGGCCCTTGCCAAGATGTCTTTTGAGGAAAAAGATT
TAACTGGTGATATCTCTGGTCTTGGTCCATTTGAGTTGGAGGCATTGCAG
GACTGGGAGTATAAGTTCATGAGCAAGTATGTTAAGGNTGGATCTATCAA
GTCGACAGTTCCAGTAACAGATGGAGCCTCCTCTGGTGAATC
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