CF417133

Overview
NameCF417133
Unique NameCF417133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417133 vs. ExPASy Swiss-Prot
Match: ALLP_BACSU (Probable allantoin permease OS=Bacillus subtilis GN=pucI PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 58/205 (28.29%), Postives = 91/205 (44.39%), Query Frame = 1
Query:    1 IETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMXXXXXXXXXXXXXXXXXXXX-TANISFWATVALNIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLLDQXXXXXXXXXXXXXXSLATITTNI 609
            I+T+ G  A+ +LL         +      LG        F+ FW   L ++  G+E I+  E ++ P++ ++    ++WA   AGG G +                     T  I  WAT+ LNIPDFTR+A++Q +QI GQ  GLP     F F  + +T  +QV FG  I   + +L +               +ATI+ N+
Sbjct:  122 IQTFAGSTALNILLLNMWPGWGEIGGEWNILGIHLSGLLSFVFFWAIHLLVLHHGMESIKRFEVWAGPLVYLVFGGMVWWAVDIAGGLGPIYSQPGKFHTFSETFWPFAAGVTGIIGIWATLILNIPDFTRFAETQKEQIKGQFYGLPGTFALFAFASITVTSGSQVAFGEPIWDVVDILARFDNPYVIVLSVITLCIATISVNV 326          
BLAST of CF417133 vs. ExPASy Swiss-Prot
Match: YEME_SCHPO (Uncharacterized permease C29B12.14c OS=Schizosaccharomyces pombe GN=SPAC29B12.14c PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 1
Query:    1 IETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIREL---EKYSAPILIILTSSFLFWAYVNAGGFGHMXXXXXXXXXXXXXXXXXXXXTANISFWATVALNIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLL 534
            ++ WIGGE V L++       S +  ++   GT   ++  F  FWL     +W  +  IR L   + + AP   I   +FL WA V A G G                       + +  +AT+ +N PDFTR+A + N  I  Q   +P+  G  T +G+ +  +++ I+G  I +P+ LL
Sbjct:  148 VQAWIGGECVTLMIRSIWPSFSHIPNTMAKSGTETYQWVGFFIFWLISNVAIWFPVYQIRHLFTAKSFLAPPAAI---AFLIWALVKAHGAGDAIHAKTQLSTWNHGWAVTAGIISCLDNFATLIVNNPDFTRFATTPNAPIFPQLITIPMGFGITTLIGVLVGSASKSIYGENIWNPLDLL 326          
BLAST of CF417133 vs. ExPASy Swiss-Prot
Match: FUR4_SCHPO (Uracil permease OS=Schizosaccharomyces pombe GN=fur4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.458e-13
Identity = 46/179 (25.70%), Postives = 78/179 (43.58%), Query Frame = 1
Query:    1 IETWIGGEAVFLLLPKFIKQSSILSQSLPWLGTSPLEFACFIAFWLAQLAIVWKGIEGIRELEKYSAPILIILTSSFLFWAYVNAGGFGHMXXXXXXXXXXXXXXXXXXXXTANISFWATVALNIPDFTRYAKSQNDQILGQ-AGLPIFMGAFTFVGLAITCSTQVIFGRVISSPIQLL 534
            ++ WIGGE V L++       S +  ++   GT   ++  F  FWL     +W  +  IR L  + A +      +FL WA V A G G +                       I  +AT+ +N PDF R+A +       Q   +P+  G  + +G+ ++ +++ I+G  +  P QLL
Sbjct:  150 VQAWIGGECVVLMIRSIWPSFSHIPNTMAKSGTETYQWVGFFIFWLLSNIAIWFPVHQIRHLFTFKAIVAPPAAIAFLIWALVKAHGAGPVIHEPTKLGQYEHAWVVINGIVTCIDGFATLIVNNPDFARFATTPGAVHWPQIITVPLAFGVTSLIGVLVSSASKAIYGTTLWDPTQLL 328          
The following BLAST results are available for this feature:
BLAST of CF417133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ALLP_BACSU1.772e-1728.29Probable allantoin permease OS=Bacillus subtilis G... [more]
YEME_SCHPO1.552e-1328.02Uncharacterized permease C29B12.14c OS=Schizosacch... [more]
FUR4_SCHPO3.458e-1325.70Uracil permease OS=Schizosaccharomyces pombe GN=fu... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-063 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417133 ID=CF417133; Name=CF417133; organism=Citrus sinensis; type=EST; length=642bp
ATTGAAACTTGGATCGGTGGTGAGGCAGTTTTCCTTCTTTTGCCAAAATT
TATAAAACAATCTTCAATATTGTCACAATCTTTACCTTGGCTTGGCACTT
CTCCTTTAGAATTTGCATGTTTTATTGCCTTTTGGTTGGCTCAATTGGCC
ATTGTATGGAAAGGAATAGAAGGAATTAGAGAGCTTGAAAAATACTCAGC
TCCAATTCTTATCATACTCACTTCAAGTTTCCTTTTTTGGGCTTATGTCA
ATGCTGGTGGATTTGGTCACATGCTCTCGAAATCATCCAAGCTTTCCTCT
TCAGAATTTTGGTCACTCTTTTTTCCTTCACTCACTGCAAATATAAGCTT
TTGGGCTACTGTTGCACTTAACATACCTGATTTTACTAGATATGCCAAGA
GCCAAAATGACCAAATTTTGGGTCAAGCTGGTCTGCCAATTTTTATGGGA
GCGTTTACTTTTGTTGGCCTAGCAATAACTTGCTCTACACAAGTAATTTT
TGGCCGTGTTATCTCTAGTCCAATTCAACTGCTTGATCAAATTGGAGGGA
TTACAACAAGAATCCTTGGTATTATAGGCATTAGCCTTGCCACCATTACA
ACTAATATTGCAGCTAATGTTGTGGCTCCCGCAAATGCCCTT
back to top