CF417134

Overview
NameCF417134
Unique NameCF417134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417134_ssr163 microsatellite CF417134_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417134_ssr48 microsatellite CF417134_ssr48:48..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig436 contig Csv1_Contig436:1..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 2.149e-45
Identity = 86/127 (67.72%), Postives = 98/127 (77.17%), Query Frame = 1
Query:   85 MGIELHSVKVISGGWSVAVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV----KSSAFNFL 453
            MG  L S+K ISGGW  A + CD CK+  AAVFCRVDSAFLC+ CD RIH+   +H RVW+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V     SS F  L
Sbjct:    1 MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGIL 126          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.638e-40
Identity = 76/112 (67.86%), Postives = 92/112 (82.14%), Query Frame = 1
Query:  133 VAVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD--SADSIVKSSAFNFL 453
            +A K CD+CK+A AA++CR D+AFLCL+CD ++H      ++HARVWMCEVCEQAPA VTCKADAAALCVTCD DIHSANPLARRHER+P+ PF+D  S+D  VK +A NFL
Sbjct:    1 MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFL 112          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.633e-35
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFL 453
            CD+CK+ AA +FCR D+AFLC +CD +IH      ++H RVW+CEVCEQAPA VTCKADAAALCVTCD DIHSANPL+RRHER+PI PF+D+       SS+ NF+
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.387e-28
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  115 ISGGWSVAVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEP 402
            +   W+ A   CDTC++AA  V+CR DSA+LC +CD ++H      ++H RV +C+ CE+APAA  CKADAA+LC TCD++IHSANPLARRH+R+PI P
Sbjct:    4 VESNWAQA---CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILP 99          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.072e-28
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  118 SGGWSVAVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEP 402
            SG W+ A   CDTC++AA  V+C  DSA+LC  CD R+H      ++H RV +C+ CE APAA  CKADAA+LC  CD +IHSANPLARRH+R+PI P
Sbjct:    9 SGTWARA---CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILP 103          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 51/99 (51.52%), Postives = 73/99 (73.74%), Query Frame = 1
Query:  115 ISGGWSVAVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEP 402
            I  G +   +PCDTC++ A  V+C  DSA+LC++CD ++H+     ++H RV +CE CE+APAA  C+AD A+LC  CD+++HSANPLARRH+R+PI P
Sbjct:    9 IGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILP 107          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  145 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 405
            PCD C    A +FCR D+A LCL CD ++H       KH R  +C+ C   P +V C  D   LC  CD D+H +  ++  H R  +E F
Sbjct:    8 PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGF 97          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1
Query:  136 AVKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 405
            +V  C+ C    A +FCR D+A LCL CD  +H+      KH R  +C+ C + P +V C  D   LC  CD D+H +   +  HER  +E F
Sbjct:    8 SVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF 100          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 405
            CD C ++ A V+C+ DSA LCL CD ++H       KH R  +C+ C ++P+++ C+ + + LC  CD   H+A+  +  H R P E F
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99          
BLAST of CF417134 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.343e-12
Identity = 37/109 (33.94%), Postives = 54/109 (49.54%), Query Frame = 1
Query:  148 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWM------------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV 429
            CD C    A+VFC  D A LC  CD ++H+     +KH R  +            C++C+   A + C+ D A LC  CD+ IH+AN   ++H+R  +     SA S V
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSV 113          
The following BLAST results are available for this feature:
BLAST of CF417134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COL5_ARATH2.149e-4567.72Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL4_ARATH4.638e-4067.86Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH2.633e-3564.15Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL1_ARATH2.387e-2855.56Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL2_ARATH9.072e-2857.14Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH1.547e-2751.52Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL15_ARATH9.738e-1438.89Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL14_ARATH9.738e-1437.63Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL13_ARATH6.312e-1337.08Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
STHX_ARATH5.343e-1233.94Probable salt tolerance-like protein At1g75540 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-064 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417134 ID=CF417134; Name=CF417134; organism=Citrus sinensis; type=EST; length=465bp
AAACTAGTCTTTGCATTCCGCCACGTTTACTCCAGAGACCAAAACTCAAA
GAAAGAAAGAAAGAGGCTTTATTTAGTAATGCCCATGGGAATTGAATTAC
ATAGCGTGAAGGTTATTTCCGGCGGGTGGAGCGTGGCGGTGAAGCCATGC
GACACGTGCAAAGCGGCGGCGGCGGCTGTTTTCTGCAGAGTTGACTCTGC
TTTCCTATGCCTGAACTGCGATTTAAGAATCCACAATTGCATGAACAAAC
ACGCGCGTGTCTGGATGTGCGAGGTCTGCGAGCAGGCCCCTGCGGCTGTC
ACGTGTAAGGCTGATGCGGCTGCCTTGTGTGTCACGTGCGACAATGATAT
CCACTCTGCCAACCCTTTAGCCCGGCGCCATGAACGCCTCCCTATTGAGC
CGTTCTTCGACTCGGCTGACTCGATTGTCAAGTCGTCGGCTTTTAACTTC
CTGGTTCCGAGTGAT
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