CF417135
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.447e-77 Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706 PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLG + G G R VGE NDLYPGG YFDPLGLADDP TFAE Sbjct: 113 PEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN-----GLPGVGEGNDLYPGGQYFDPLGLADDPTTFAE 208 HSP 2 Score: 102.064 bits (253), Expect = 1.447e-77 Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 3 Query: 114 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 ++ATPFLGQ++ AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPG Sbjct: 14 VKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPG 73 HSP 3 Score: 86.6557 bits (213), Expect = 1.447e-77 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI P Sbjct: 71 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFP 113
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.339e-73 Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706 PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLG G ++ VGE NDLYPGG YFDPLGLADDPVTFAE Sbjct: 116 PEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLD-GVGEGNDLYPGGQYFDPLGLADDPVTFAE 211 HSP 2 Score: 87.8113 bits (216), Expect = 4.339e-73 Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 3 Query: 123 TPFL-GQSRT-TANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 TPFL GQ R +A+ L+D+ N + TMGN+LWYGPDRVKYLGPFSAQTPSYL GEFPG Sbjct: 17 TPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPG 76 HSP 3 Score: 87.4261 bits (215), Expect = 4.339e-73 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ P Sbjct: 74 FPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFP 116
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.386e-48 Identity = 63/99 (63.64%), Postives = 68/99 (68.69%), Query Frame = 2 Query: 413 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 TPE+L K V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+ GA V+ L GE D +YPGG FDPLGLADDP TFAE Sbjct: 117 TPELLAK-SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPL--GEVTDPIYPGGS-FDPLGLADDPDTFAE 211 HSP 2 Score: 79.7221 bits (195), Expect = 2.386e-48 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLS+DPE FARNR LEVIH RWAMLGALGC+ P Sbjct: 76 FAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTP 118 HSP 3 Score: 51.2174 bits (121), Expect = 2.386e-48 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3 Query: 189 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 +K + +WYG DR K+LGPFS +TPSYL GEF G Sbjct: 43 SKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAG 78
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.387e-48 Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 2 Query: 413 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 TPE+L K V F E VWFKAG+QIF+EGGLDYLGNP+LVHAQSILA+ GA V+ L GE D +YPGG FDPLGLADDP FAE Sbjct: 114 TPELLAK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPL--GEVEDPIYPGGS-FDPLGLADDPEAFAE 208 HSP 2 Score: 80.1073 bits (196), Expect = 2.387e-48 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P Sbjct: 73 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTP 115 HSP 3 Score: 55.0694 bits (131), Expect = 2.387e-48 Identity = 29/64 (45.31%), Postives = 32/64 (50.00%), Query Frame = 3 Query: 129 FLGQSRTTANALKDVVPMGNAKYTM--------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 F GQ N L V G A+ M +WYG DR YLGPFS PSYL+GEFPG Sbjct: 12 FSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPG 75
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.828e-48 Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ GA V+ L GE D +YPGG FDPLGLADDP FAE Sbjct: 128 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPL--GEVTDPIYPGGN-FDPLGLADDPDAFAE 221 HSP 2 Score: 80.4925 bits (197), Expect = 6.828e-48 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P Sbjct: 86 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128 HSP 3 Score: 56.9954 bits (136), Expect = 6.828e-48 Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 3 Query: 216 WYGPDRVKYLGPFSAQTPSYLTGEFPG 296 WYGPDRV YLGPFS + PSYLTGEFPG Sbjct: 62 WYGPDRVLYLGPFSGEPPSYLTGEFPG 88
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.155e-47 Identity = 57/98 (58.16%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 PE+L + V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+ GA V+ L GE D +YPGG FDPLGLADDP FA+ Sbjct: 128 PELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPL--GEVTDPIYPGGN-FDPLGLADDPDAFAD 221 HSP 2 Score: 80.4925 bits (197), Expect = 1.155e-47 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P Sbjct: 86 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128 HSP 3 Score: 57.3806 bits (137), Expect = 1.155e-47 Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 3 Query: 216 WYGPDRVKYLGPFSAQTPSYLTGEFPG 296 WYGPDRV YLGPFS + PSYLTGEFPG Sbjct: 62 WYGPDRVMYLGPFSGEPPSYLTGEFPG 88
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.617e-47 Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLG----IPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 PE+L + V F E WFKAG+QIFSEGGLDYLGN +L+HAQSILA+ + G G R +A +GE D +YPGG FDPL LADDP FAE Sbjct: 95 PELLAR-NGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYR------IAGGPLGEVTDPIYPGGS-FDPLALADDPEAFAE 188 HSP 2 Score: 80.4925 bits (197), Expect = 5.617e-47 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P Sbjct: 53 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 95 HSP 3 Score: 60.4622 bits (145), Expect = 5.617e-47 Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 3 Query: 120 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 +TP LG R + +K WYGPDRVKYLGPFS + PSYLTGEFPG Sbjct: 4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPG 55
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.536e-46 Identity = 56/98 (57.14%), Postives = 65/98 (66.33%), Query Frame = 2 Query: 413 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASLXVGEXNDLYPGGXYFDPLGLADDPVTFAE 706 TPE+L + V F EPVWFKAGAQIFSEGGLDYLG+P L+HAQ+I+A L + G V+ G + LYP G FDPLGLADDP TFAE Sbjct: 104 TPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEG-LDPLYP-GESFDPLGLADDPDTFAE 199 HSP 2 Score: 69.707 bits (169), Expect = 3.536e-46 Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE F + R LEVIH RWA+LGALG + P Sbjct: 63 FPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTP 105 HSP 3 Score: 56.6102 bits (135), Expect = 3.536e-46 Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 Query: 216 WYGPDRVKYLGPFSAQTPSYLTGEFPG 296 WYGPDR K+LGPFS TP+YLTGEFPG Sbjct: 39 WYGPDRAKWLGPFSTNTPAYLTGEFPG 65
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.007e-44 Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 2 Query: 416 PEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAV----LGIPGCPHGARXRVSVSMASLXVGEXND-LYPGGXYFDPLGLADDPVTFAE 706 PE+L + V F E WFKAG+QIFS+GGLDYLGNP+LVHAQS+LA+ + + G G R +A +GE D LYPGG FDPLGLA+ P FAE Sbjct: 116 PELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYR------IAGGPLGEIVDPLYPGGS-FDPLGLAERPQAFAE 209 HSP 2 Score: 79.337 bits (194), Expect = 4.007e-44 Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ P Sbjct: 74 FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116 HSP 3 Score: 53.5286 bits (127), Expect = 4.007e-44 Identity = 23/36 (63.89%), Postives = 25/36 (69.44%), Query Frame = 3 Query: 189 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPG 296 AK + WYG DRV YLGP S + PSYLTGEFPG Sbjct: 41 AKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPG 76
BLAST of CF417135 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.220e-44 Identity = 54/99 (54.55%), Postives = 68/99 (68.69%), Query Frame = 2 Query: 413 TPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGIPGCPHGARXRVSVSMASL-XVGEXNDLYPGGXYFDPLGLADDPVTFAE 706 TPE+L ++ V F EPVWFKAGAQIF++GGL+YLGN +L+HAQSI+A L + G + S + + + LYPGG FDPLGLADDP TFAE Sbjct: 99 TPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAE 196 HSP 2 Score: 69.707 bits (169), Expect = 5.220e-44 Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 289 FQVDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCIHP 417 F DYGWDTAGLSADP+ FAR R +E+IH RWA+LGALG + P Sbjct: 58 FPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTP 100 HSP 3 Score: 47.7506 bits (112), Expect = 5.220e-44 Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 3 Query: 216 WYGPDRVKYLGPFSA-QTPSYLTGEFPG 296 +YGPDR K+LGPFS TP YLTGEFPG Sbjct: 33 FYGPDRAKFLGPFSENDTPEYLTGEFPG 60 The following BLAST results are available for this feature:
BLAST of CF417135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417135 ID=CF417135; Name=CF417135; organism=Citrus sinensis; type=EST; length=708bpback to top |