CF417139

Overview
NameCF417139
Unique NameCF417139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8322 contig Csv1_Contig8322:24..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417139 vs. ExPASy Swiss-Prot
Match: GLYK_ARATH (D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 76/165 (46.06%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  218 NPSHKFSHMPTHVSKSEALSAGTGCSWMQNNSMLQSGEGCPDLKQGLVCSAIPTERA-KVSSVQDLFEFISSGPLIDKMGFSKEKIGDSIDKWIAYNSYLCRLFQLNELYLTIPQKVRFFHYYIPVF------LGV*RSNFSACVXV*GWEKIYLPWGIGFSAPQ 691
            NPS  +        ++ +  A  GCSW+Q+NSM+       +      CSA+PT     VSSV DLFEFI SGPL++K+G + +++G SIDKW+ Y S LCRLFQLNEL LTIPQK R +HYYIPVF      + +  S F     V        P  IGFSAPQ
Sbjct:   61 NPSSSYLSSKLSPIRTHSSFAACGCSWIQDNSMVHDYATTTN-GTSKRCSALPTTNTVDVSSVSDLFEFICSGPLVNKIGITPQRVGQSIDKWLLYGSQLCRLFQLNELKLTIPQKARLYHYYIPVFIWCEDQIALHNSKFKDGDDV-------PPLVIGFSAPQ 217          
The following BLAST results are available for this feature:
BLAST of CF417139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GLYK_ARATH1.035e-2946.06D-glycerate 3-kinase, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-069 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417139 ID=CF417139; Name=CF417139; organism=Citrus sinensis; type=EST; length=692bp
GAGAAGCAGAGAGGAAGAGATGAGCATGGCAACTTTGAATATCTTATTGC
CAACTCCATCGACAAATTCTCATTATTTTAATGCTAATTATAGTCAATCT
TCTCATAATGTTTATTTTAATACTAATAATAATAGTAATAATAATACTAA
ATTACACTCGTTGCCGTGCTCTCATTCTCTTCCTCTTCTTTCTTCTCTCT
TTGTGCAAACCAAATCAAACCCATCTCACAAATTCTCTCATATGCCAACC
CATGTGTCCAAATCAGAGGCTCTTTCTGCTGGAACTGGATGTTCATGGAT
GCAAAATAATTCCATGCTTCAAAGTGGTGAAGGTTGCCCTGATTTGAAGC
AGGGCCTAGTATGTTCAGCCATTCCCACGGAACGTGCTAAAGTTTCATCT
GTTCAGGACCTTTTCGAGTTTATAAGCTCAGGTCCTCTCATAGACAAGAT
GGGCTTTTCCAAAGAAAAGATAGGCGACTCGATTGACAAGTGGATAGCGT
ACAACTCGTACTTGTGTCGGCTTTTTCAGCTCAATGAACTGTATCTTACA
ATCCCACAGAAAGTTAGGTTTTTTCACTACTACATACCTGTTTTCTTGGG
GGTGTGAAGATCAAATTTCTCAGCATGTGTCCNAGTTTAAGGATGGGAGA
AGATATACCTCCCTTGGGGGATTGGTTTCAGCGCACCACAAG
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