CF417141

Overview
NameCF417141
Unique NameCF417141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig437 contig Csv1_Contig437:1..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.475e-74
Identity = 90/112 (80.36%), Postives = 104/112 (92.86%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+ALSRNKGKDW+ A GA RAKYLRAIAAK+ ERK++LA LE +DCGKPL+EAVWD+DDVAGCFE+YADLAEGLDAKQKAPVSLP+E+FKSYVLK+P+ G+ GLITPWNYP
Sbjct:   54 ARRALSRNKGKDWAKAPGAVRAKYLRAIAAKVNERKTDLAKLEALDCGKPLDEAVWDMDDVAGCFEFYADLAEGLDAKQKAPVSLPMESFKSYVLKQPL-GVVGLITPWNYP 164          

HSP 2 Score: 107.842 bits (268), Expect = 1.475e-74
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  P+LAAGC AILKPSELASVTCLELA+  +E G   P  L +   +  EAGAPL SHP VDKIAFTGS ATGS++M AAA +VKPVS+
Sbjct:  171 KVAPSLAAGCTAILKPSELASVTCLELADICREVGLP-PGVLNVLTGFGSEAGAPLASHPGVDKIAFTGSFATGSKVMTAAAQLVKPVSM 259          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 6.077e-73
Identity = 87/112 (77.68%), Postives = 100/112 (89.29%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+A +RN GKDW+ A+GA RAKYLRAIAAK+ ERKSELANLE IDCGKPL+EA WD+DDVAGCFEYYADLAEGLDAKQK P+SLP++ FK Y+LKEPI G+ G+ITPWNYP
Sbjct:   54 ARKAFTRNNGKDWARATGAVRAKYLRAIAAKVIERKSELANLEAIDCGKPLDEAAWDMDDVAGCFEYYADLAEGLDAKQKTPLSLPMDTFKGYILKEPI-GVVGMITPWNYP 164          

HSP 2 Score: 106.686 bits (265), Expect = 6.077e-73
Identity = 58/90 (64.44%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  P+LAAGC AILKPSELAS+TCLELA+  +E G   P  L +      EAGAPL SHPHVDKI FTGS  TGS IM +AA +VKPVSL
Sbjct:  171 KVAPSLAAGCTAILKPSELASLTCLELADICREVGLP-PGVLNILTGLGTEAGAPLASHPHVDKIVFTGSTTTGSSIMTSAAKLVKPVSL 259          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.979e-69
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+AL RNKG+DW+SASGA RAKYLRAIAAKITE+K   A LE +DCGKPL+EA  DIDDVAGCFEYYAD AE LDAKQKAP++LP++ FK +VLK+PI G+ GLI+PWNYP
Sbjct:   54 ARRALKRNKGEDWASASGAHRAKYLRAIAAKITEKKDYFAKLEAMDCGKPLDEAARDIDDVAGCFEYYADQAEALDAKQKAPIALPMDTFKCHVLKQPI-GVVGLISPWNYP 164          

HSP 2 Score: 108.997 bits (271), Expect = 2.979e-69
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC+A+LKPSELASVTCLELAE  +E G   P  L +     PEAG PL  HP VDK+AFTGS ATGS++M++AA +VKPV+L
Sbjct:  171 KVAPALAAGCSAVLKPSELASVTCLELAEVCREVGLP-PGVLNILTGLGPEAGGPLACHPDVDKVAFTGSTATGSKVMSSAAQLVKPVTL 259          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.566e-66
Identity = 78/112 (69.64%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+AL RNKG++W++ SGA RA+YLRAIAAK+TERK     LETID GKP +EAV DIDDVA CFEY+A  AE +DAKQKAPV+LP+E FKS+VL++PI G+ GLITPWNYP
Sbjct:   54 ARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDEAVLDIDDVATCFEYFAGQAEAMDAKQKAPVTLPMERFKSHVLRQPI-GVVGLITPWNYP 164          

HSP 2 Score: 107.071 bits (266), Expect = 8.566e-66
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC A+LKPSELAS+TCLE  E   E G   P  L +     P+AGAPL +HP VDK+AFTGS+ATGS++MA+AA +VKPV+L
Sbjct:  171 KIAPALAAGCTAVLKPSELASITCLEFGEVCNEVGLP-PGVLNIVTGLGPDAGAPLAAHPDVDKVAFTGSSATGSKVMASAAQLVKPVTL 259          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.070e-64
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR A  R+ G+ WS A GA RAKYL+AIAAKI ++KS LA LET+D GKPL+EA  D++DVA CFEYYADLAE LD KQ+AP+SLP+ENF+SYVLKEPI G+ GLITPWNYP
Sbjct:   56 ARDAFGRDGGRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEAAGDMEDVAACFEYYADLAEALDGKQRAPISLPMENFESYVLKEPI-GVVGLITPWNYP 166          

HSP 2 Score: 103.99 bits (258), Expect = 2.070e-64
Identity = 58/90 (64.44%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC A+LKPSELAS+TCLEL     E G   P  L +      EAGAPL SHPHVDKIAFTGS  TG RIM  A+ MVKPVSL
Sbjct:  173 KVAPALAAGCTAVLKPSELASLTCLELGGICAEIGLP-PGVLNIITGLGTEAGAPLASHPHVDKIAFTGSTETGKRIMITASQMVKPVSL 261          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.179e-62
Identity = 74/112 (66.07%), Postives = 88/112 (78.57%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+A  RN   +WS+ SGA RA YLRAIAAKITE+K     LETID GKP +EAV DIDDVA CFEY+A  AE LD KQKAPV+LP+E FKS+VL++P+ G+ GLI+PWNYP
Sbjct:   54 ARRAFRRN---NWSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEAVLDIDDVASCFEYFAGQAEALDGKQKAPVTLPMERFKSHVLRQPL-GVVGLISPWNYP 161          

HSP 2 Score: 110.538 bits (275), Expect = 4.179e-62
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC A+LKPSELASVTCLE  E   E G   P  L +     P+AGAPLVSHP VDKIAFTGS+ATGS++MA+AA +VKPV+L
Sbjct:  168 KIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVGLP-PGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQLVKPVTL 256          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.738e-61
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGC---FEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+A  RNKG+DW+ A  + RAKYLRAIAAKITE+K     LET+D GKP +EAV DIDDVA C   FEY+A  AE LDAKQKAPV+LP+E FKS+VL++PI G+ GLI+PWNYP
Sbjct:   54 ARKAFKRNKGRDWA-ALWSHRAKYLRAIAAKITEKKDHFVKLETLDSGKPRDEAVLDIDDVATCFEYFEYFAGQAEALDAKQKAPVTLPMERFKSHVLRQPI-GVVGLISPWNYP 166          

HSP 2 Score: 107.842 bits (268), Expect = 7.738e-61
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC  +LKPSELASVTCLE  E   E G   P  L +     P+AGAP+VSHP +DK+AFTGS+ATGS+IMA+AA +VKPV+L
Sbjct:  173 KIAPALAAGCTTVLKPSELASVTCLEFGEVCNEVGLP-PGVLNILTGLGPDAGAPIVSHPDIDKVAFTGSSATGSKIMASAAQLVKPVTL 261          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.426e-60
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            W+ ASGA RAKYL AIAAKIT + + LA LET+D GKP +EAV D+DDVA CFEYYA LAE LD KQ AP+SLP+E FK+YVLKEPI G+ GLITPWNYP
Sbjct:   67 WARASGATRAKYLNAIAAKITGKIAYLALLETVDSGKPKDEAVADMDDVAACFEYYAALAEALDGKQHAPISLPMEEFKTYVLKEPI-GVVGLITPWNYP 165          

HSP 2 Score: 107.071 bits (266), Expect = 8.426e-60
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLI-LSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAGC A+LKPSELAS+TCLEL    +E G  LP+ ++ +     P+AGAP+ SHPHVDKIAFTGS ATG  IM AAA MVKPVSL
Sbjct:  172 KVAPALAAGCTAVLKPSELASLTCLELGAICEEIG--LPSGVLNIITGLGPDAGAPIASHPHVDKIAFTGSTATGKTIMTAAAQMVKPVSL 260          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BADH_SCHPO (Probable betaine aldehyde dehydrogenase OS=Schizosaccharomyces pombe GN=meu8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.852e-27
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   37 WSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIW--GLFGLITPWNYP 336
            W+   G  R   LR IA  + E++  LA ++TI+CGKP   A++DID  A  FEYYA++AE         V +PL N   +   E  +  G+ G+ITPWN+P
Sbjct:   78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAE----TDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFP 175          

HSP 2 Score: 67.0106 bits (162), Expect = 2.852e-27
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGGSSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PA+A+G   +LKPSELA  +CLE A   KE G       ++      E+GA L  HP +  +AFTGS ATG +IM AAA  + P++L
Sbjct:  182 KLVPAIASGNCVVLKPSELAPWSCLEFALICKEAGLPDGVLNVIIGSG-KESGAALSCHPKIAYLAFTGSLATGKKIMHAAAENIVPLTL 270          
BLAST of CF417141 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.388e-26
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 ARQALSRNKGKDWSSASGAFRAKYLRAIAAKITERKSELANLETIDCGKPLEEAVWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPLENFKSYVLKEPIWGLFGLITPWNYP 336
            AR+A  +    +WSS SG  R K +  IA  I     ELA LE++D GK LEE+  D+DD+A  F+YYA LA   D      +S P+ + +S +++EPI G+ G ITPWNYP
Sbjct:   49 ARRAFDKG---EWSSLSGLERGKIVLKIAELIRRDLEELAELESLDTGKTLEESKADMDDIANVFQYYAGLA---DKDGGEIISSPIPDSESKIIREPI-GVCGQITPWNYP 153          

HSP 2 Score: 54.299 bits (129), Expect = 1.388e-26
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  357 KWPPALAAGCAAILKPSELASVTCLELAECVKEGG-SSLPAFLILSPDWVPEAGAPLVSHPHVDKIAFTGSNATGSRIMAAAAPMVKPVSL 626
            K  PALAAG   ++KPSE+  +T +++ + ++E G     A L+L P      G  L  +  VD I+FTG   TG +IM AA+  VK ++L
Sbjct:  160 KIAPALAAGNTIVMKPSEITPLTTIKVFKLMEEAGVPKGVANLVLGPG--ATVGDELAVNKDVDLISFTGGIETGKKIMRAASGNVKKIAL 248          
The following BLAST results are available for this feature:
BLAST of CF417141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
BADH1_ARATH1.475e-7480.36Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH2_ARATH6.077e-7377.68Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH_AMAHP2.979e-6974.11Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_BETVU8.566e-6669.64Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_ORYSJ2.070e-6470.54Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_SPIOL4.179e-6266.07Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ATRHO7.738e-6166.09Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_HORVU8.426e-6072.00Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
BADH_SCHPO2.852e-2740.20Probable betaine aldehyde dehydrogenase OS=Schizos... [more]
BETB_BACSU1.388e-2644.64Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-071 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417141 ID=CF417141; Name=CF417141; organism=Citrus sinensis; type=EST; length=634bp
GCCCGTCAAGCACTTTCTAGAAACAAAGGGAAGGATTGGTCCTCTGCATC
CGGGGCATTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGATAACAG
AGAGGAAGTCTGAACTGGCAAACCTTGAAACGATTGATTGTGGGAAGCCA
CTGGAAGAAGCTGTTTGGGACATCGATGATGTTGCTGGGTGTTTTGAGTA
CTATGCAGACCTTGCTGAAGGCTTAGATGCCAAACAAAAGGCTCCTGTTT
CTCTTCCTCTGGAGAATTTCAAGAGTTATGTACTTAAGGAACCCATTTGG
GGGTTGTTTGGATTGATTACTCCATGGAATTATCCCTCTATTGATGGCCA
CATGGAAAGTGGCCTCCTGCGTTGGCAGCAGGATGCGCTGCAATATTAAA
GCCATCTGAATTGGCGTCTGTGACCTGTTTGGAGCTTGCTGAATGTGTNA
AAGAAGGTGGGTCTTCCCTCCCGGCGTTCTTAATATTGTCACCGGATTGG
GTCCCTGAAGCTGGGGCTCCTTTGGTATCCCATCCCCACGTTGACAAGAT
TGCATTTACTGGAAGCAATGCAACAGGGAGCAGGATAATGGCAGCTGCAG
CTCCGATGGTCAAGCCTGTTTCTTTGGGAGCTGG
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