CF417142

Overview
NameCF417142
Unique NameCF417142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:248..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            + LCM V+    A AITCGQVT SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C+ V+
Sbjct:   13 VALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            + LCM+V+ P+ AQAITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C+ V+
Sbjct:   13 VALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.733e-34
Identity = 63/106 (59.43%), Postives = 84/106 (79.25%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            + LCM+V+ P+ AQA+TCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   13 VALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            ITCGQV+ SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.597e-32
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32
Identity = 67/107 (62.62%), Postives = 79/107 (73.83%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.430e-32
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 3
Query:   15 VLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            V CM+V  P + +A++CGQV+ SLAPCI YL  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSKV+
Sbjct:   13 VTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.786e-32
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            LV+CM+V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C+ V+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.786e-32
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 3
Query:   57 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CF417142 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.870e-32
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 3
Query:   12 LVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 329
            + LCM V+    A AITC QV+ +LAPCI Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   13 VALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CF417142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO2.510e-3565.09Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU2.510e-3562.26Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV4.733e-3459.43Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUAR1.989e-3267.03Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU2.597e-3262.62Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU3.392e-3262.62Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP_HELAN4.430e-3261.90Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP2_LENCU5.786e-3261.68Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUPE5.786e-3264.84Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO9.870e-3257.55Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-072 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417142 ID=CF417142; Name=CF417142; organism=Citrus sinensis; type=EST; length=569bp
TTGTTTCAGCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCT
CAGGCCATAACATGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGT
TTACTTGAGATCGGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCA
GGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGC
AACTGCTTGAAGCAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAA
TGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAGCATTCCTTACAAGATCA
GCATCTCCACTGACTGCTCTAAGGTCCGGTGAACAGGAATCTGGGCTGTT
GATTTTCATATTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGA
CATTTTTGTGTCCGAATTATGAGTCTCTCTCTACACTTTGTACTGCGAGT
CTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTATTGTCTTTGCTTTTCAT
GTCATCGTCAGTTTGTGTCTATTCTGNTTATTAAATGAAATCTTGCCTTG
TGTTCAAAAAAAAAAAAAA
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