CF417143 | Citrus Genome Database

Overview


Name	CF417143
Unique Name	CF417143
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	617

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10990	contig	Csv1_Contig10990:727..1338.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 6.854e-67
Identity = 100/135 (74.07%), Postives = 108/135 (80.00%), Query Frame = 2

Query:  173 SPQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            SP +  TGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWA    L    +    +  GRLGEV DPLY  GSFDP+
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVL-MGAVEGYHVAGGRLGEVVDPLYLGGSFDPL 196

HSP 2 Score: 63.1586 bits (152), Expect = 6.854e-67
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYL 189
            MA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYL
Sbjct:    6 MAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYL 68

HSP 3 Score: 30.8018 bits (68), Expect = 6.854e-67
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGL DDPE FAELK
Sbjct:  195 PLGLGDDPERFAELK 209

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 8.533e-64
Identity = 104/133 (78.20%), Postives = 111/133 (83.46%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWA    L G +  E  RV     G LGE  DPL P G+FDP+
Sbjct:   71 TGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLI--EGYRVG---GGTLGEGLDPLLPGGAFDPL 198

HSP 2 Score: 50.0618 bits (118), Expect = 8.533e-64
Identity = 32/65 (49.23%), Postives = 38/65 (58.46%), Query Frame = 1

Query:   10 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYL 189
            SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYL
Sbjct:    9 SSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYL 70

HSP 3 Score: 31.5722 bits (70), Expect = 8.533e-64
Identity = 15/18 (83.33%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  564 ALIPLGLADDPEAFAELK 617
            A  PLGLADDPEA AELK
Sbjct:  194 AFDPLGLADDPEACAELK 211

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.825e-61
Identity = 112/133 (84.21%), Postives = 116/133 (87.22%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEVTDPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAI--EGYRVA---GGPLGEVTDPLYPGGSFDPL 199

HSP 2 Score: 34.2686 bits (77), Expect = 1.825e-61
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  198 PLGLADDPEAFAELK 212

HSP 3 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 70/185 (37.84%), Postives = 91/185 (49.19%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS SF G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGA+EGYR+AGGP
Sbjct:    6 MALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAIEGYRVAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.169e-60
Identity = 111/138 (80.43%), Postives = 117/138 (84.78%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  R+     G LGEVTDP+YP GSFDP+
Sbjct:   74 PPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV--EGYRIA---GGPLGEVTDPIYPGGSFDPL 206

HSP 2 Score: 32.7278 bits (73), Expect = 1.169e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  205 PLGLAEDPEAFAELK 219

HSP 3 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 60/187 (32.09%), Postives = 78/187 (41.71%), Query Frame = 1

Query:   25 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRLPGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGPPR*SD*PIVP 555
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYL    P           + P N  +         +   +G+     P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP      PI P
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL-VHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYP 199

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.169e-60
Identity = 109/134 (81.34%), Postives = 114/134 (85.07%), Query Frame = 2

Query:  176 PQATWTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            P +  TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA    L    +    +  G LGEV DPLYP GSFDP+
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 197

HSP 2 Score: 32.7278 bits (73), Expect = 1.169e-60
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAF ELK
Sbjct:  196 PLGLADDPEAFGELK 210

HSP 3 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 67/186 (36.02%), Postives = 86/186 (46.24%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS+ F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGP SGEPPSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSTAFAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-IHAQSILAIWACQVVLMGAVEGYRIAGGP 180

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.169e-60
Identity = 107/129 (82.95%), Postives = 112/129 (86.82%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L    +    +  G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 34.2686 bits (77), Expect = 1.169e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  198 PLGLADDPEAFAELK 212

HSP 3 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 73/185 (39.46%), Postives = 93/185 (50.27%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSSS F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRIAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.169e-60
Identity = 110/133 (82.71%), Postives = 115/133 (86.47%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  R+     G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV--EGYRIA---GGPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 34.2686 bits (77), Expect = 1.169e-60
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLADDPEAFAELK
Sbjct:  198 PLGLADDPEAFAELK 212

HSP 3 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 71/185 (38.38%), Postives = 88/185 (47.57%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS S  GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYRIAGGP
Sbjct:    6 MALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVILMGAVEGYRIAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.591e-60
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 32.7278 bits (73), Expect = 2.591e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  198 PLGLAEDPEAFAELK 212

HSP 3 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 71/185 (38.38%), Postives = 94/185 (50.81%), Query Frame = 1

Query:    1 MALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSSS F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AGGP
Sbjct:    6 MALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.591e-60
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   72 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 199

HSP 2 Score: 32.7278 bits (73), Expect = 2.591e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  198 PLGLAEDPEAFAELK 212

HSP 3 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 73/185 (39.46%), Postives = 94/185 (50.81%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS SF GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AGGP
Sbjct:    6 MALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVVLMGAVEGYRVAGGP 182

[Close]

BLAST of CF417143 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 2.591e-60
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = 2

Query:  191 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLYPXGSFDPI 577
            TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA    L G +  E  RV     G LGEV DPLYP GSFDP+
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV--EGYRVA---GGPLGEVVDPLYPGGSFDPL 197

HSP 2 Score: 32.7278 bits (73), Expect = 2.591e-60
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  573 PLGLADDPEAFAELK 617
            PLGLA+DPEAFAELK
Sbjct:  196 PLGLAEDPEAFAELK 210

HSP 3 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 71/183 (38.80%), Postives = 91/183 (49.73%), Query Frame = 1

Query:    1 MALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLDW*VPW*LRLGHCWAFS*PRNLCQEP*TRSHPLQMGHVGSSWMRL-------PGALXXXXXXXXXXXXXXXXXXDLQRGRA*LLGEPKPDPRSEHLGHLGFARWSWMGAVEGYRIAGGP 525
            MALSS SF G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYL    P      + W  +    L  +P T +   ++  +   W  L       P  L                      G    LG P     ++ +  +   +   MGAVEGYR+AGGP
Sbjct:    6 MALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPG----DYGWDTA---GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL-VHAQSILAIWACQVILMGAVEGYRVAGGP 180

The following BLAST results are available for this feature:

BLAST of CF417143 vs. ExPASy Swiss-Prot

BLAST of CF417143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CB48_MAIZE	6.854e-67	74.07	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB21_PINTH	8.533e-64	78.20	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB27_TOBAC	1.825e-61	84.21	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB2B_PINSY	1.169e-60	80.43	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB22_MAIZE	1.169e-60	81.34	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB2G_SOLLC	1.169e-60	82.95	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2A_SPIOL	1.169e-60	82.71	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB25_TOBAC	2.591e-60	83.46	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB24_TOBAC	2.591e-60	83.46	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB22_TOBAC	2.591e-60	83.46	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-073 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H4 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417143 ID=CF417143; Name=CF417143; organism=Citrus sinensis; type=EST; length=617bp
ATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTC
AGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGA
GCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAG
TACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGGACTGGTGAGT
TCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAA
ACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCAT
GTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAG
TCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
GAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAG
CATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGAGCCGTTGA
GGGTTACAGAATTGCTGGAGGGCCGCCTCGGTGAAGTGACTGACCCATTG
TACCCANGTGGCAGCTTTGATCCCATTGGGTTTGGCTGATGACCCGGAGG
CTTTTGCTGAGCTCAAG