CF417144

Overview
NameCF417144
Unique NameCF417144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:109..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.834e-97
Identity = 137/160 (85.62%), Postives = 147/160 (91.88%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAV L+PS +E++  GR++MRKT +K+   SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 92.4337 bits (228), Expect = 1.834e-97
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  170 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 2.393e-97
Identity = 138/160 (86.25%), Postives = 148/160 (92.50%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS SF GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 90.5077 bits (223), Expect = 2.393e-97
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 2.393e-97
Identity = 136/159 (85.53%), Postives = 146/159 (91.82%), Query Frame = 2
Query:    2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            T ALSS F GKAV L+PS +E++  G+++MRKT SK+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 90.5077 bits (223), Expect = 2.393e-97
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 9.044e-97
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS SF G+AV L+PS  E++  GR+SMRKT +K V+S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162          

HSP 2 Score: 90.5077 bits (223), Expect = 9.044e-97
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  168 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.180e-96
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS SF G+AV L+PS +E+S  GRI+MRK  +KS  S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162          

HSP 2 Score: 90.8929 bits (224), Expect = 1.180e-96
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 213          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 3.418e-96
Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 2
Query:    2 TMALSSS-FVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSSS F GKAV L+PS +E++  G+++MRKT +K+  +SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 90.1225 bits (222), Expect = 3.418e-96
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVK 624
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+DPEAFAELKVK
Sbjct:  170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 3.418e-96
Identity = 136/160 (85.00%), Postives = 145/160 (90.62%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS SF G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 93.5893 bits (231), Expect = 3.418e-96
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGA+EGYR+AGGPLG VTDPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  170 MGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 215          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 4.459e-96
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 2
Query:    2 TMALSSSFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            T ALSS F GKAV L+PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 163          

HSP 2 Score: 87.4261 bits (215), Expect = 4.459e-96
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AG PLG V DPLYPGGSFDPLGLA+DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKE 214          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.901e-96
Identity = 137/158 (86.71%), Postives = 143/158 (90.51%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            +MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV H RWAMLGALGCVFPELL+RNGVKFGEAVWF AG+QIFSEGGLDYLGNPSLIHAQSILAIWA
Sbjct:    6 SMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 160          

HSP 2 Score: 93.5893 bits (231), Expect = 9.901e-96
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYRIAGGPLG VTDP+YPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  166 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE 211          
BLAST of CF417144 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.868e-95
Identity = 135/160 (84.38%), Postives = 145/160 (90.62%), Query Frame = 2
Query:    2 TMALSS-SFVGKAVNLAPSXNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVXHCRWAMLGALGCVFPELLARNGVKFGEAVWFXAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 472
            TMALSS SF GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEV HCRWAMLGALGCVFPELLARNGVKFGEAVWF AG+QIFSEGGLDYLGNPSL+HAQSILAIWA
Sbjct:    5 TMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 164          

HSP 2 Score: 92.0485 bits (227), Expect = 2.868e-95
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:  490 MGAVEGYRIAGGPLGXVTDPLYPGGSFDPLGLADDPEAFAELKVKK 627
            MGAVEGYR+AGGPLG V DPLYPGGSFDPLGLADDPEAFAELKVK+
Sbjct:  170 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215          
The following BLAST results are available for this feature:
BLAST of CF417144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2G_SOLLC1.834e-9785.63Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC2.393e-9786.25Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.393e-9785.53Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_TOBAC9.044e-9786.08Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2B_SOLLC1.180e-9686.08Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC3.418e-9685.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB27_TOBAC3.418e-9685.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_NICPL4.459e-9684.91Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN9.901e-9686.71Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_PETSP2.868e-9584.38Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-074 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417144 ID=CF417144; Name=CF417144; organism=Citrus sinensis; type=EST; length=628bp
TACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCANGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTG
AGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCNTCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCANGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTNTGCCAGGTGGTCTTGNATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGANGTGACTGACCCAT
TGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGAAAT
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