CF417148

Overview
NameCF417148
Unique NameCF417148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10494 contig Csv1_Contig10494:892..1601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417148 vs. ExPASy Swiss-Prot
Match: ABIL2_ARATH (Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = 3 
Query:   84 ATFSFTSTMPKKDQDKRTVSPHRFPLLRSGSISNRPKIPNAGRPMTPNSSRPTTPNASDAKRRYPSEPRKSYSMRMPAERENCKDFE-QHPXXXXXXXXXXXXXXXXXXDDMLYT 425
            ATFSFTST+PKK+QDKR+VSPHRFPLLRSGS++ R K  +  RP TP+ SR  TP       RYPSEPR+S S+R+  E++N K+ E Q P                  DD LYT
Sbjct:  200 ATFSFTSTIPKKEQDKRSVSPHRFPLLRSGSVATR-KSASISRPTTPSKSRSITP------IRYPSEPRRSASVRVAFEKDNQKETEQQQPSKSKRLLKALLSRRKTKKDDTLYT 307
[Close]
BLAST of CF417148 vs. ExPASy Swiss-Prot
Match: ABIL3_ARATH (Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 62/144 (43.06%), Postives = 75/144 (52.08%), Query Frame = 3 
Query:    6 TPRETPAXXXXXXXXXXXXXXXXXXXATFSFTS--TMPKKDQDKRTVSPHRFPLLRSGSISNRPKIPNAGRPMTPNSSRPTTPNASDAKRRYPSEPRKSYSMRMPAERENCK--DFEQHPXXXXXXXXXXXXXXXXXXDDMLYT 425
            T RETP                    ATFSF+S  T PKK+QDKR VSPHRFPLLRSGS++ RP   +  RP TP+ SR  TP      +RYPSEPR+S S+R+  E+E  K  + +Q P                  DD LYT
Sbjct:  179 TIRETPPPPVRKPILQSPSQRKPQRSATFSFSSIATAPKKEQDKRAVSPHRFPLLRSGSVAIRPS--SISRPTTPSKSRAVTP----TPKRYPSEPRRSASVRVAFEKEAQKEPEHQQQPSKSKRLLKALLSRRKTKKDDTLYT 316
The following BLAST results are available for this feature:
BLAST of CF417148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ABIL2_ARATH2.418e-2151.30Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=... [more]
ABIL3_ARATH1.733e-1943.06Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-078 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417148 ID=CF417148; Name=CF417148; organism=Citrus sinensis; type=EST; length=715bp
GAGAAACACCTAGGGAAACCCCAGCATCTTCAGTTAGGAAAGGACGTTCT
CCCTCACCTTCACCAAGACCTCCACAACGATCAGCCACATTTTCCTTTAC
ATCAACCATGCCCAAAAAAGATCAAGATAAGCGTACAGTGTCACCACACC
GGTTTCCACTTTTGCGTTCTGGTTCAATCTCAAATAGGCCGAAAATCCCA
AATGCTGGAAGGCCAATGACCCCAAATTCAAGTAGACCAACAACTCCAAA
TGCTTCTGATGCAAAACGACGGTACCCTTCGGAGCCTCGAAAATCATATT
CCATGCGTATGCCTGCTGAAAGGGAAAACTGTAAAGACTTTGAACAACAC
CCCAGCAAAAGTAAACGGCTCCTTAAGGCATTACTTAGTAGGCGCAAATC
AAAGAAAGATGACATGCTATATACTTTATCTGGATGAATACTGATGAAAT
ACATATACTGCTTGCAAAGAAAAGGCAAGCAACCAGGGAAAGACATCCTG
GTACGGGGAAAGGACTGTGAGATTGCACTCTGTTTGCCCTTTGTTTGAAT
GATTTTTTTCCCCCCTTTATATAGTTTTAATGTATTACTAGAAGTAGACG
GACATCATCTTTTATTNATCTTTTTCAGTCATCAATTACTTGGTAATATT
GTGTGCAAATGTTGATGCTTNCCTATCAATGTATCCCTGGTCATGTTGCA
GAAAAAAAAAAAAAA
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