CF417149

Overview
NameCF417149
Unique NameCF417149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417149_ssr112 microsatellite CF417149_ssr112:112..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1028 contig Csv1_Contig1028:149..760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417149 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.660e-22
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 3 
Query:  183 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDF----TRMXXXXXXXXXXXXXXXXAFEMFELE 443
            ++EL+QVF HFD DGDGKISA ELR YFGS+GEY+S+E A+ AI             +DF    TR                 AFEMFE+E
Sbjct:   62 KEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFEDFVGLMTRRDLYGDGEVDGDGELKTAFEMFEVE 152

HSP 2 Score: 40.4318 bits (93), Expect = 4.660e-22
Identity = 16/22 (72.73%), Postives = 21/22 (95.45%), Query Frame = 1 
Query:  451 GCITPKGLQRMLNRLGDSKSYG 516
            GCITPKGLQ+ML +LG+S++YG
Sbjct:  156 GCITPKGLQKMLVKLGESRTYG 177

HSP 3 Score: 29.261 bits (64), Expect = 4.660e-22
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 2 
Query:  518 ECVAMIQVFDTDGQREFLIXHEFSQMM 598
            EC AMI+ +D DG    L  HEF QMM
Sbjct:  178 ECEAMIKFYDIDG-NGILDFHEFRQMM 203
The following BLAST results are available for this feature:
BLAST of CF417149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CML41_ARATH4.660e-2246.15Probable calcium-binding protein CML41 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-079 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417149 ID=CF417149; Name=CF417149; organism=Citrus sinensis; type=EST; length=617bp
ACAAGGTTGCAGGTTCTAAGCCATCTAATTCTAAGTGGTTCTTTTCTAAC
AAGGGTCATGGGTTAAGCCTTCACCGTCGTCGATCAAAGTCAAAGTCTAG
TTCTTCATCGTCAACAACAACAACAACATTAAGCTCTCCAAACTCCTCCT
TGTCTGCATGCGAACCCAAAAAGATCACAAAAGAAGATGAGTTGAAGCAA
GTCTTTCGTCATTTTGATGGTGATGGAGACGGGAAAATTTCGGCTCTCGA
ACTTAGGGCTTACTTTGGTTCCATTGGTGAGTACATGTCATACGAAGAGG
CTCGAGCAGCGATTGATGATTTTGACACCGATGGTGACAGTTTATTGGAT
TTTCAAGATTTCACGAGGATGCTGCTCAAAGACGATCGAGGCGATGGCGA
TGACGAGGATCTGAAGAAGGCCTTTGAGATGTTTGAATTGGAGNAAGAAA
GGGTGCATAACTCCAAAAGGTTTGCAAAGGATGTTGAATCGCCTTGGAGA
TTCTAAATCTTATGGACGAGTGCGTTGCCATGATTCAAGTCTTTGATACT
GATGGGCAACGGGAGTTCTTGATTNATCATGAGTTTTCCCAAATGATGGC
TTAATTTACTATTTATT
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