CF417157

Overview
NameCF417157
Unique NameCF417157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417157_ssr32 microsatellite CF417157_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT5_ARATH (Putative glycosyltransferase 5 OS=Arabidopsis thaliana GN=GT5 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.097e-63
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1
Query:  436 ETNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDK 699
            + NPNATY LGPKI+ WD  RK WL+ N EFPS V+GK +ILL+TGS PKPCDNPIGDHYLLKSVKNKIDYCRLHGIEI+YNMAHLDK
Sbjct:  112 DMNPNATYVLGPKITDWDSQRKVWLNQNPEFPSTVNGKARILLLTGSPPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIVYNMAHLDK 199          

HSP 2 Score: 107.842 bits (268), Expect = 1.097e-63
Identity = 62/99 (62.63%), Postives = 70/99 (70.71%), Query Frame = 2
Query:   98 MGQDNFTPLKRSSTGAAAGGVLPTTNAASAANGRTGRGAM-PRGRQIQKTFNNIKITILCGFVTILVLRGTIGV-NFSSPDEETINQQLIEEANRVLAE 388
            MGQD     KR S    +GG LPTT   +   GR GRG + PRGRQ+QKTFNNIKITILCGFVTILVLRGTIGV N  S   + +NQ +IEE NR+LAE
Sbjct:    1 MGQDGSPAHKRPS---GSGGGLPTTTLTNGG-GRGGRGGLLPRGRQMQKTFNNIKITILCGFVTILVLRGTIGVGNLGSSSADAVNQNIIEETNRILAE 95          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT3_ARATH (Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.558e-62
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1
Query:  448 NATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDK 699
            N TY+LGPKI++WD  RK WL+ N +FPS ++GK K+LL+TGS PKPCDNPIGDHYLLKSVKNKIDYCR+HGIEI+YNMAHLDK
Sbjct:  115 NMTYTLGPKITNWDQKRKLWLTQNPDFPSFINGKAKVLLLTGSPPKPCDNPIGDHYLLKSVKNKIDYCRIHGIEIVYNMAHLDK 198          

HSP 2 Score: 111.694 bits (278), Expect = 1.558e-62
Identity = 59/96 (61.46%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  104 QDNFTPLKRSSTGA-AAGGVLPTTNAASAANGRTGRGAMPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNFSSPDEETINQQLIEEANRVLAE 388
            +D F   KR ST + AA GVLPTT A+        R   PRGRQIQKTFNN+K+TILCGFVTILVLRGTIG+NF + D + +NQ +IEE NR+LAE
Sbjct:    4 EDGFRTQKRVSTASSAAAGVLPTTMASGGV-----RRPPPRGRQIQKTFNNVKMTILCGFVTILVLRGTIGINFGTSDADVVNQNIIEETNRLLAE 94          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: XT1_ARATH (Xyloglucan 6-xylosyltransferase OS=Arabidopsis thaliana GN=XT1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.704e-35
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  448 NATYSLGPKISSWDLDRKAWLSHNAEFPSHV-DGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLD 696
            N  YSLGPKIS WD  R+ WL  N  FP+ V   KP++LLVTGS PKPC+NP+GDHYLLKS+KNKIDYCR+HGIEI YNMA LD
Sbjct:  114 NKPYSLGPKISDWDEQRRDWLKQNPSFPNFVAPNKPRVLLVTGSAPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLD 197          

HSP 2 Score: 38.891 bits (89), Expect = 1.704e-35
Identity = 26/66 (39.39%), Postives = 37/66 (56.06%), Query Frame = 2
Query:  221 RGRQIQKTFNNIKITILCGFVTILVLRGTIGV-NFSSP--DEETINQQLI-----EEANRVLAETA 394
            R R++Q+     K+TILC  +T++VLRGTIG   F +P  D E I +         E +RVL E +
Sbjct:   10 RFRRLQRFMRQGKVTILCLVLTVIVLRGTIGAGKFGTPEKDIEEIREHFFYTRKRGEPHRVLVEVS 75          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT4_ARATH (Putative glycosyltransferase 4 OS=Arabidopsis thaliana GN=GT4 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 61/88 (69.32%), Postives = 78/88 (88.64%), Query Frame = 1
Query:  436 ETNPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLDK 699
            + +PNATY+LGPKI++WD  RK WL+ N EFP+ V+GK +ILL+TGS+P PCD PIG++YLLK+VKNKIDYCRLHGIEI+YNMA+LD+
Sbjct:  170 DISPNATYTLGPKITNWDSQRKVWLNQNPEFPNIVNGKARILLLTGSSPGPCDKPIGNYYLLKAVKNKIDYCRLHGIEIVYNMANLDE 257          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT2_ARATH (Putative glycosyltransferase 2 OS=Arabidopsis thaliana GN=GT2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  442 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVD-GKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHLD 696
            +PN  Y+LGPKIS WD  R  WL+ N  FP+ +   KP++LLVTGS PKPC+NP+GDHYLLKS+KNKIDYCRLHGIEI YNMA LD
Sbjct:  113 DPNKPYTLGPKISDWDEQRSDWLAKNPSFPNFIGPNKPRVLLVTGSAPKPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLD 198          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GMGT1_CYATE (Galactomannan galactosyltransferase 1 OS=Cyamopsis tetragonoloba GN=GMGT1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  442 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHL 693
            +P  +Y++   + +WD  RK WL H+  F +    + KILLVTGS PK C NPIGDH LL+  KNK+DYCRLH  +IIYN A L
Sbjct:   84 DPETSYTMDKPMKNWDEKRKEWLLHHPSFGAAA--RDKILLVTGSQPKRCHNPIGDHLLLRFFKNKVDYCRLHNYDIIYNNALL 165          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT7_ARATH (Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  442 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDG-KPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHL 693
            +P+ TY++   + +WD  R+ WL+ +   PS + G + + ++VTGS   PC NPIGDH LL+  KNK+DYCR+HG +I Y+ A L
Sbjct:   89 DPDLTYTIEKPVKNWDEKRRRWLNLH---PSFIPGAENRTVMVTGSQSAPCKNPIGDHLLLRFFKNKVDYCRIHGHDIFYSNALL 170          
BLAST of CF417157 vs. ExPASy Swiss-Prot
Match: GT6_ARATH (Glycosyltransferase 6 OS=Arabidopsis thaliana GN=GT6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  442 NPNATYSLGPKISSWDLDRKAWLSHNAEFPSHVDGKP----KILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYN 681
            +P+ +YS+   I+ WD  R  W      F SH   KP    +I++VTGS   PC NPIGDH LL+  KNK+DY R+HG +I Y+
Sbjct:   72 DPDLSYSIEKPITKWDEKRNQW------FESHPSFKPGSENRIVMVTGSQSSPCKNPIGDHLLLRCFKNKVDYARIHGHDIFYS 149          
The following BLAST results are available for this feature:
BLAST of CF417157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GT5_ARATH1.097e-6379.55Putative glycosyltransferase 5 OS=Arabidopsis thal... [more]
GT3_ARATH1.558e-6276.19Putative glycosyltransferase 3 OS=Arabidopsis thal... [more]
XT1_ARATH1.704e-3570.24Xyloglucan 6-xylosyltransferase OS=Arabidopsis tha... [more]
GT4_ARATH4.603e-3369.32Putative glycosyltransferase 4 OS=Arabidopsis thal... [more]
GT2_ARATH1.253e-3068.60Putative glycosyltransferase 2 OS=Arabidopsis thal... [more]
GMGT1_CYATE1.101e-1852.38Galactomannan galactosyltransferase 1 OS=Cyamopsis... [more]
GT7_ARATH3.314e-1544.71Putative glycosyltransferase 7 OS=Arabidopsis thal... [more]
GT6_ARATH3.664e-1445.24Glycosyltransferase 6 OS=Arabidopsis thaliana GN=G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-087 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417157 ID=CF417157; Name=CF417157; organism=Citrus sinensis; type=EST; length=701bp
AAAAGAGTCACTCCATGAACTCCGGATAACGGAAAGAAAGAAAAAGAAAC
TAAAAACTAAATTATAATTAATTATATATATCTCTCTGAGATTGCATATG
GGGCAAGACAATTTCACGCCTCTGAAGAGATCCTCAACGGGCGCTGCAGC
AGGCGGCGTTCTTCCCACCACCAACGCAGCCTCCGCCGCCAACGGCAGGA
CGGGACGTGGAGCCATGCCGCGTGGCAGGCAGATCCAGAAGACCTTCAAC
AACATCAAGATCACCATCCTCTGTGGCTTCGTTACCATTCTCGTCCTACG
TGGCACCATCGGTGTCAACTTCAGCAGCCCCGACGAAGAAACCATCAACC
AGCAGCTCATCGAGGAGGCCAACCGTGTCCTCGCCGAGACCGCTCCGACG
TCGACCCGGACGATCCGGATGAGCCCTCCGACTCGGAGACCAACCCCAAT
GCCACTTACTCTCTGGGTCCCAAAATATCCTCCTGGGACCTGGATCGTAA
GGCTTGGCTGAGTCATAACGCTGAGTTTCCGAGCCATGTTGACGGTAAGC
CTAAGATTTTGCTCGTTACCGGCTCCACTCCTAAGCCTTGTGATAATCCN
ATTGGCGATCATTACTTGCTGAAATCTGTTAAGAATAAGATTGACTATTG
TAGGCTTCATGGGATTGAGATTATTTATAATATGGCTCATTTAGATAAGG
A
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