CF417158

Overview
NameCF417158
Unique NameCF417158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:344..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.571e-36
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LGAGR +AQGAK VDLALASGKI + EG  Y + SFE GT+HLIGLL DGGVHSRLDQ+QL LKG +ERGAKR R+HILTDGRDVLDGSS
Sbjct:   89 LGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSS 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.571e-36
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GFVE +E DLA LR KGVD Q
Sbjct:  180 GFVETLEADLAALRAKGVDAQ 200          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.954e-36
Identity = 71/90 (78.89%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LGAGR FAQGAK VD ALASGKI   +G  Y   SFE GTLHLIGLL DGGVHSRLDQLQL LKG SERGAK+ R+HILTDGRDVLDGSS
Sbjct:   88 LGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDGRDVLDGSS 177          

HSP 2 Score: 33.4982 bits (75), Expect = 5.954e-36
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GFVE +E DL ELR KGVD Q
Sbjct:  179 GFVETLENDLLELRAKGVDAQ 199          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.316e-35
Identity = 70/90 (77.78%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LGAGR +AQGAK VDLAL SGKI   EG  Y   SFE  TLHLIGLL DGGVHSRLDQLQL LKG +ERGAKR R+HILTDGRDVLDGSS
Sbjct:   88 LGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSS 177          

HSP 2 Score: 34.2686 bits (77), Expect = 1.316e-35
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GFVE +E DLA+LR KGVD Q
Sbjct:  179 GFVETLENDLAQLRAKGVDAQ 199          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.087e-34
Identity = 67/96 (69.79%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSSXXIRRT 288
            LGAGR +AQGAK VDLALASGKI + EG  Y    F+ GTLHLIGLL DGGVHSRLDQLQL LKG +E GAKR R+H+LTDGRDV+DG+S     T
Sbjct:   85 LGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAET 180          

HSP 2 Score: 31.187 bits (69), Expect = 4.087e-34
Identity = 14/21 (66.67%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GF E +EKDL  LR KGVD Q
Sbjct:  176 GFAETLEKDLENLREKGVDAQ 196          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.176e-33
Identity = 69/96 (71.88%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSSXXIRRT 288
            LGAGR FAQGAK VDLALASGKI + EG  Y    FE GTLHLIGLL DGGVHSRLDQ+QL LKG ++ GAKR R+H LTDGRDVLDGSS     T
Sbjct:   88 LGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMET 183          

HSP 2 Score: 29.6462 bits (65), Expect = 1.176e-33
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GF+E +E  LA+LR KG+D Q
Sbjct:  179 GFMETLENSLAQLREKGIDAQ 199          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.995e-33
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LGAGR FAQGAK  D ALASGKI + EG  Y + SFE  TLHL+GLL DGGVHSRLDQLQL +KG +ERGAKR R+HILTDGRDVLDGSS
Sbjct:   87 LGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRVHILTDGRDVLDGSS 176          

HSP 2 Score: 28.4906 bits (62), Expect = 1.995e-33
Identity = 13/21 (61.90%), Postives = 14/21 (66.67%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GFVE +E DL  LR  GVD Q
Sbjct:  178 GFVETLEADLVALRENGVDAQ 198          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.194e-32
Identity = 67/96 (69.79%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGXIYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSSXXIRRT 288
            LGAGR FAQGAK VD AL +GK+ + EG  Y   SF   TLHLIGLL DGGVHSRLDQL L +KG SERGAKR R+HILTDGRDVLDGSS     T
Sbjct:   17 LGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDGGVHSRLDQLLLLVKGASERGAKRIRVHILTDGRDVLDGSSVGFAET 112          

HSP 2 Score: 28.4906 bits (62), Expect = 6.194e-32
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 2
Query:  275 GFVEPIEKDLAELRGKGVDPQ 337
            GF E +E  LA+LR KGVD Q
Sbjct:  108 GFAETLENYLAQLREKGVDAQ 128          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGX--IYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LG+GR F QGAK V  ++ASG I   +    +  N      TLHL+GL  DG VHS +D  +  +         + RLHIL DGRDV + S+
Sbjct:   84 LGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSA 175          
BLAST of CF417158 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 LGAGRFFAQGAKXVDLALASGKIXQXEGX--IYFNPSFEXGTLHLIGLLXDGGVHSRLDQLQLXLKGXSERGAKRFRLHILTDGRDVLDGSS 270
            LG+GR F QGAK V  ++ASG I   +    +  N      TLHL+GL  DG VHS +D  +  +         + RLHIL DGRDV + S+
Sbjct:   84 LGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSA 175          
The following BLAST results are available for this feature:
BLAST of CF417158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PMG2_ARATH4.571e-3677.78Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMGI_MAIZE5.954e-3678.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR1.316e-3577.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_RICCO4.087e-3469.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_TOBAC1.176e-3371.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG1_ARATH1.995e-3375.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU6.194e-3269.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN1.948e-1141.30Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC1.948e-1141.302,3-bisphosphoglycerate-independent phosphoglycera... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-088 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417158 ID=CF417158; Name=CF417158; organism=Citrus sinensis; type=EST; length=342bp
CTCGGTGCTGGTCGCTTTTTTGCTCAAGGTGCAAAGNTTGTTGACCTTGC
TCTGGCCTCTGGGAAAATCTNNCAANATGAGGGATTNATTTACTTTAACC
CGTCTTTTGAANCCGGCACTTTGCACCTAATTGGGTTACTGANTGATGGT
GGAGTACACTCNAGGCTTGATCAACTTCAATTGTTNCTAAAAGGANCTAG
TGAGCGGGGTGCTAAAAGATTCCGTCTTCATATTCTTACTGACGGGCGTG
ATGTTTTGGATGGTTCAAGCGNANGGATTCGTAGAACCTATTGAAAAAGA
TCTTGCAGAATTGCGTGGGAAAGGTGTTGACCCCCAGAATTG
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