CF417161

Overview
NameCF417161
Unique NameCF417161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5196 contig Csv1_Contig5196:69..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417161 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 3 
Query:  258 EVKAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGGCLWRXKXGSS*K*GVGCPFTKVLLCQGKMLGSTLQFEFGGIIAGHXGVEXRIPSLFAKHQGX*KLSPTGK*GXARLYYLRDKLPRLSTFK 647
            E K  RKPR+KLGD+MGILN++AIE +E  RP+P+IRTG  +         K  +      V+  Q   + +T++     IIAG  GVE   P +++ +    K+    K   ARLYYLRDKLPRLSTFK
Sbjct:  100 EAKPTRKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR--RIIAG-IGVEIVFP-IYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225
[Close]
BLAST of CF417161 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 58/131 (44.27%), Postives = 76/131 (58.02%), Query Frame = 3 
Query:  255 EEVKAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGGCLWRXKXGSS*K*GVGCPFTKVLLCQGKMLGSTLQFEFGGIIAGHXGVEXRIPSLFAKHQGX*KLSPTGK*GXARLYYLRDKLPRLSTFK 647
            EE K P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTG  +         K  +      V+  Q   + +T++     IIAG  GVE   P +++ +    K+    K   ARLYYLRDKLPRLSTFK
Sbjct:  103 EEAKPPWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR--RIIAG-IGVEIVFP-IYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229
[Close]
BLAST of CF417161 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 3 
Query:  258 EVKAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGGCLWRXKXGSS*K*GVGCPFTKVLLCQGKMLGSTLQFEFGGIIAGHXGVEXRIPSLFAKHQGX*KLSPTGK*GXARLYYLRDKLPRLSTFK 647
            E + PR+ RVKLGDIMGILNK+A+ A+E  RP+P IRTG  +         K  +      V+  Q   + +T++     IIAG  GVE   P L++ +    K+    K   ARLYYLRDKLPRLSTFK
Sbjct:  108 EERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIR--RIIAG-VGVEIVFP-LYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233
The following BLAST results are available for this feature:
BLAST of CF417161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK191_ARATH2.453e-1543.8550S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH5.464e-1544.2750S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RK19_SPIOL1.217e-1444.6250S ribosomal protein L19, chloroplastic OS=Spinac... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-091 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417161 ID=CF417161; Name=CF417161; organism=Citrus sinensis; type=EST; length=689bp
CTAGGGTTTTCAACAGTTCTTTCTCGCGGCCCCTTTGTGAGCCATGGGGT
TTCAGTTTCAACGAAGCCTATAGGGTGGAATTTGGGCTTTTTCGTAAATG
CCCAAGTGAAAGATAGTTTTGTGGTTAGGGCGGAGTCAAACGAAGAAGCG
GAAGCGAATGAGAGTATTGAAGAGGAGCAAAACGAGGCCGTTCAAGCACA
AGGTGGATGTTGTGGTAGCTGTAGAAGCTGAATCTGAGGATAAGGTTGAA
GAAAGAAGAAGTGAAAGCACCCAGAAAGCCCAGGGTTAAACTTGGAGATA
TCATGGGGATATTGAATAAGAGGGCGATTGAGGCATCGGAGAGTGAAAGA
CCAATTCCAGATATTAGGACGGGTGGATGTTTGTGGAGATTNAAATTNGG
AAGTTCCTGAAAATAGGGCGTAGGTTGTCCATTTACAAAGGTATTGTTAT
GTCAAGGCAAAATGCTGGGATCCACACTACAATTCGAATTCGGAGGGATT
ATTGCTGGGCATANGGGGGTTGAGNATCGTATTCCCTCTTTATTCGCCAA
ACATCAAGGGANATAAAAGTTGTCTCCCACAGGAAAGTGAGGANGGGCAA
GGCTGTACTATCTTAGAGACAAGCTTCCTAGACTCTCCACTTTCAAATGA
AGAAGCCCGATGCTGCTGGTCTTCAGTTGATTTTGCCTT
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