CF417164 | Citrus Genome Database

Overview


Name	CF417164
Unique Name	CF417164
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	678

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y1839_ARATH (Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-30
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1

Query:  112 RSKRFRSSS----ETELEDPTTLFLHRHRSASLLPPV--FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYCS 456
            ++K +R+SS         DP+       ++  LL  V  F+YEELE +TN FDP +++GDGGFG+VY G+L DGR VAVK L+      N     + F NE+ IL+ + HPNLV L G CS
Sbjct:  293 KTKSYRNSSALLPRNISSDPSAKSFDIEKAEELLVGVHIFSYEELEEATNNFDPSKELGDGGFGTVYYGKLKDGRSVAVKRLYD-----NNFKRAEQFRNEVEILTGLRHPNLVALFG-CS 407

HSP 2 Score: 45.4394 bits (106), Expect = 1.579e-30
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            SL W +RL IA++TA A++YLH S    I+HRD+ S+NI ++
Sbjct:  439 SLPWSIRLKIAVETASALKYLHAS---KIIHRDVKSNNILLD 477

HSP 3 Score: 41.9726 bits (97), Expect = 1.579e-30
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 2

Query:  440 FTGTAADPRGLLLVYDYIPNGTLADHLHGSKS 535
            F  ++   R LLLVY+Y+ NGTLADHLHG ++
Sbjct:  404 FGCSSKQSRDLLLVYEYVANGTLADHLHGPQA 435

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.983e-25
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 1

Query:   31 LNRIAILSTVFSLT-CLLLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            L+++ +L T   L   L++   I    FR+K+  SS    + +     L  + S     P +TY+E+E +T+ F  K  +G G +G+VY G+  +   VA+K L  K      + S     NEI +LSS+ HPNLV+L G C
Sbjct:  243 LHKLVVLGTAGILVGVLVIVVLIATYFFRNKQSASSERASIANRLLCELAENSSV----PFYTYKEIEKATDSFSDKNMLGTGAYGTVYAGEFPNSSCVAIKRLKHK-----DTTSIDQVVNEIKLLSSVSHPNLVRLLGCC 375

HSP 2 Score: 53.9138 bits (128), Expect = 1.983e-25
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+WQ+RL IA QTA A+ +LH SV PPI HRDI SSNI ++
Sbjct:  406 LSWQLRLAIACQTANAIAHLHSSVNPPIYHRDIKSSNILLD 446

HSP 3 Score: 27.335 bits (59), Expect = 1.983e-25
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2

Query:  476 LVYDYIPNGTLADHL 520
            LVY+++PNGTL  HL
Sbjct:  383 LVYEFMPNGTLYQHL 397

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.268e-25
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 1

Query:   79 LLAFSIGIAIF--RSKRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            LL+   G+ +F  R +R R + + EL               + P +FTY EL+S+T  FDP  K+G+GGFG VY G L DGR+VAVK L     S         F  EI+ +SS+ H NLVKL+G C
Sbjct:  647 LLSILAGVVMFTIRKRRKRYTDDEEL-----------LGMDVKPYIFTYSELKSATQDFDPSNKLGEGGFGPVYKGNLNDGRVVAVKLL-----SVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCC 757

HSP 2 Score: 37.3502 bits (85), Expect = 4.268e-25
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W  R +I L  A  + YLH      IVHRD+ +SNI ++
Sbjct:  787 LDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLD 827

HSP 3 Score: 33.4982 bits (75), Expect = 4.268e-25
Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSKSLYRD 547
            L+   G   +    +LVY+Y+PNG+L   L G K+L+ D
Sbjct:  750 LVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLD 788

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.183e-25
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 1

Query:   46 ILSTVFSLTCLLLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            I+  +  +  L +   + I I R +R R + + E+            S  + P  FTY EL+S+T  FDP  K+G+GGFG VY G+L DGR VAVK L     S         F  EI+ +S++ H NLVKL+G C
Sbjct:  637 IVGVIVGVGLLSIISGVVIFIIRKRRKRYTDDEEI-----------LSMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLL-----SVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCC 756

HSP 2 Score: 36.5798 bits (83), Expect = 7.183e-25
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W  R +I L  A  + YLH      IVHRD+ +SNI ++
Sbjct:  786 LDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLD 826

HSP 3 Score: 34.2686 bits (77), Expect = 7.183e-25
Identity = 16/39 (41.03%), Postives = 23/39 (58.97%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSKSLYRD 547
            L+   G   +    LLVY+Y+PNG+L   L G K+L+ D
Sbjct:  749 LVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLD 787

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.641e-23
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTK--SFCNEILILSSIDHPNLVKLHGYC 453
            F++ EL S+T  F  + KIG G FG VY G+L DGR VA+K    + ++  K F  K  +F +EI  LS + H +LV+L GYC
Sbjct:  484 FSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIK--RGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYC 564

HSP 2 Score: 51.6026 bits (122), Expect = 1.641e-23
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 3

Query:  558 TWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            +W++R+ IAL  A  +EYLH   VPPI+HRDI SSNI ++
Sbjct:  601 SWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLD 640

HSP 3 Score: 33.8834 bits (76), Expect = 1.641e-23
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSKSL 538
            L+   G   +    LLVYDY+ NG L DHLH   ++
Sbjct:  557 LVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNV 592

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 4.663e-23
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            F Y+E+E +T+ F  K+K+G G +G+VY G+L +   VA+K L  +      S S     NEI +LSS+ HPNLV+L G C
Sbjct:  336 FPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEWVAIKRLRHR-----DSESLDQVMNEIKLLSSVSHPNLVRLLGCC 411

HSP 2 Score: 50.8322 bits (120), Expect = 4.663e-23
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W +RL +A QTA A+ YLH S+ PPI HRDI S+NI ++
Sbjct:  441 LPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLD 481

HSP 3 Score: 31.9574 bits (71), Expect = 4.663e-23
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHL 520
            L+   G   +    +LVY+Y+PNGTL++HL
Sbjct:  404 LVRLLGCCIEQGDPVLVYEYMPNGTLSEHL 433

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLQ_ARATH (Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.019e-22
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            +FT  E+  +TN F     IG GGFG V+   L DG I A+     K    N +  T    NE+ IL  ++H +LV+L G C
Sbjct:  350 IFTGREITKATNNFSKDNLIGTGGFGEVFKAVLEDGTITAI-----KRAKLNNTKGTDQILNEVRILCQVNHRSLVRLLGCC 426

HSP 2 Score: 51.2174 bits (121), Expect = 1.019e-22
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            LTW+ RL IA QTA  + YLH +  PPI HRD+ SSNI ++
Sbjct:  459 LTWRRRLQIAYQTAEGLAYLHSAAQPPIYHRDVKSSNILLD 499

HSP 3 Score: 38.891 bits (89), Expect = 1.019e-22
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGS 529
            L+   G   D    LL+Y++IPNGTL +HLHGS
Sbjct:  419 LVRLLGCCVDLELPLLIYEFIPNGTLFEHLHGS 451

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLH_ARATH (Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.314e-22
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            VF+  ELE +T  F   R +G GG G+VY G L DGRIVAVK   SK    +K    + F NE++ILS I+H N+VKL G C
Sbjct:  434 VFSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVK--KSKVVDEDK---LEEFINEVVILSQINHRNIVKLLGCC 510

HSP 2 Score: 46.2098 bits (108), Expect = 1.314e-22
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 3

Query:  558 TWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            TW +RL IA+  A A+ YLH S   PI HRD+ S+NI ++
Sbjct:  543 TWNIRLRIAIDIAGALSYLHSSASSPIYHRDVKSTNIMLD 582

HSP 3 Score: 31.9574 bits (71), Expect = 1.314e-22
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLH 523
            ++   G   + +  +LVY++IPNG L +HLH
Sbjct:  503 IVKLLGCCLETKVPVLVYEFIPNGNLFEHLH 533

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLJ_ARATH (Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.211e-22
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            VF   ELE +T  F   R +G+GG G+VY G L DGRIVAVK   SK    +K    + F NE++ILS I+H N+VKL G C
Sbjct:  420 VFNSRELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVK--KSKVVDEDK---LEEFINEVVILSQINHRNIVKLLGCC 496

HSP 2 Score: 46.2098 bits (108), Expect = 2.211e-22
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 3

Query:  558 TWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            TW+VRL IA+  A A+ YLH +   PI HRDI S+NI ++
Sbjct:  529 TWEVRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNIMLD 568

HSP 3 Score: 31.9574 bits (71), Expect = 2.211e-22
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 2

Query:  473 LLVYDYIPNGTLADHLHGSKSLY 541
            +LVY++IPNG L +HLH     Y
Sbjct:  503 ILVYEFIPNGNLFEHLHDDSDDY 525

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.109e-22
Identity = 53/154 (34.42%), Postives = 75/154 (48.70%), Query Frame = 1

Query:   22 PTKLNRIAILSTVFSLTCLLLAFSI-GIAIFRSKR---------FRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            P +L R+ I   +     LL AF I G+  F  KR         FR +    L+      L R      +  +F+  ELE +T+ F+  R +G GG G+VY G L DGRIVAVK   +           + F NE+++L+ I+H N+VKL G C
Sbjct:  336 PEQLKRV-IQGVLIGSALLLFAFGIFGLYKFVQKRRKLIRMRKFFRRNGGMLLKQQ----LARKEGNVEMSRIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDED-----RVEEFINEVVVLAQINHRNIVKLLGCC 479

HSP 2 Score: 46.595 bits (109), Expect = 8.109e-22
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            ++TW+VRL IA++ A A+ YLH +   PI HRDI ++NI ++
Sbjct:  509 TMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLD 550

HSP 3 Score: 27.7202 bits (60), Expect = 8.109e-22
Identity = 11/37 (29.73%), Postives = 18/37 (48.65%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSKSLY 541
            ++   G   +    +LVY+++PNG L   LH     Y
Sbjct:  472 IVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDY 508

The following BLAST results are available for this feature:

BLAST of CF417164 vs. ExPASy Swiss-Prot

BLAST of CF417164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
Y1839_ARATH	1.579e-30	43.80	Probable serine/threonine-protein kinase At1g18390...	[more]
WAKLR_ARATH	1.983e-25	33.10	Wall-associated receptor kinase-like 21 OS=Arabido...	[more]
Y1561_ARATH	4.268e-25	40.94	Probable LRR receptor-like serine/threonine-protei...	[more]
Y5614_ARATH	7.183e-25	37.50	Probable LRR receptor-like serine/threonine-protei...	[more]
ACCR3_ARATH	1.641e-23	44.58	Putative serine/threonine-protein kinase-like prot...	[more]
WAKLO_ARATH	4.663e-23	43.21	Wall-associated receptor kinase-like 14 OS=Arabido...	[more]
WAKLQ_ARATH	1.019e-22	37.80	Wall-associated receptor kinase-like 20 OS=Arabido...	[more]
WAKLH_ARATH	1.314e-22	50.00	Wall-associated receptor kinase-like 9 OS=Arabidop...	[more]
WAKLJ_ARATH	2.211e-22	50.00	Wall-associated receptor kinase-like 10 OS=Arabido...	[more]
WAKLB_ARATH	8.109e-22	34.42	Wall-associated receptor kinase-like 2 OS=Arabidop...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-094 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B6 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417164 ID=CF417164; Name=CF417164; organism=Citrus sinensis; type=EST; length=678bp
TTGTCACCTCCCTGGATCCACCCAACCAAACTCAATCGCATTGCAATCTT
AAGCACCGTCTTTTCGTTAACATGTTTGCTGCTTGCGTTTTCAATTGGCA
TAGCTATTTTCAGGTCCAAAAGGTTCAGGTCGTCGTCAGAGACAGAATTA
GAAGATCCAACAACTCTGTTTCTTCATCGCCACCGCTCAGCGAGTCTTCT
CCCTCCAGTATTCACCTACGAAGAGCTCGAATCTTCCACTAATAAGTTCG
ACCCGAAGCGCAAAATCGGCGACGGAGGCTTTGGATCCGTTTACTTGGGC
CAACTATTTGACGGCCGAATCGTCGCCGTTAAATACCTTCATAGTAAACA
CCACAGTTGCAACAAATCCTTCTCCACTAAATCCTTCTGCAACGAAATCT
TGATTCTGTCCTCTATTGATCACCCAAATCTTGTTAAGCTTCACGGGTAC
TGCAGCGGATCCTAGAGGTTTGCTTTTGGTCTATGATTACATTCCCAACG
GCACACTTGCTGACCATCTCCACGGCTCAAAGAGCTTGTACCGCGACGGG
GTCGTTGACGTGGCAGGTCAGGCTTGATATCGCTTTGCAAACAGCTTTAG
CCATGGAGTACTTGCATTTCTCTGTCGTGCCTCCGATTGTTCACAGAGAT
ATTACTTCGTCTAACATTTTTGTGGAGA