CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5044 contig Csv1_Contig5044:67..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.067e-90
Identity = 138/156 (88.46%), Postives = 146/156 (93.59%), Query Frame = 2
Query:  116 LAFSSSQLSGDKIFSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            L+F+SS LSGDKIF+ +    R S R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENPNWFQGTADA
Sbjct:   29 LSFTSSHLSGDKIFTLSGRTRRTSGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENPNWFQGTADA 184          

HSP 2 Score: 75.8702 bits (185), Expect = 7.067e-90
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQA
Sbjct:  185 VRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQA 219          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.569e-89
Identity = 143/159 (89.94%), Postives = 146/159 (91.82%), Query Frame = 2
Query:  116 LAFSSSQLSGDKIFSKAVTGDRR---SERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            LAFSSS LSGDKI + +    R    S R PIVVSP+AVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA
Sbjct:   15 LAFSSSSLSGDKIQTTSFLNRRYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 173          

HSP 2 Score: 75.0998 bits (183), Expect = 1.569e-89
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLE+L+LAGDHLYRMDYERF+QA
Sbjct:  174 VRQYLWLFEEHNVLEYLILAGDHLYRMDYERFVQA 208          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.052e-86
Identity = 145/199 (72.86%), Postives = 155/199 (77.89%), Query Frame = 2
Query:    8 MASMASIGSLXXXXXXXXXXXXXXXXXXXXXXXXXXLAFSSSQLSGDK-------IFSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            MA+MA+IGSL                          L+FSSS L+G+K       I S    G+ R  R P +VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA
Sbjct:    1 MATMAAIGSLKVPSSSSNHTRRLSSSSQRKT-----LSFSSSSLTGEKLNPTQEIIISNLPRGNER--RTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192          

HSP 2 Score: 75.8702 bits (185), Expect = 2.052e-86
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQA
Sbjct:  193 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQA 227          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.927e-85
Identity = 137/160 (85.62%), Postives = 147/160 (91.88%), Query Frame = 2
Query:  116 LAFSSSQLSGDKIF---SKAVTGDRRSERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            L+FSSS L+GDK+    S    G R + RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTADA
Sbjct:   34 LSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADA 193          

HSP 2 Score: 72.0182 bits (175), Expect = 2.927e-85
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQA
Sbjct:  194 VRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQA 228          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.819e-85
Identity = 136/160 (85.00%), Postives = 146/160 (91.25%), Query Frame = 2
Query:  116 LAFSSSQLSGDKIF---SKAVTGDRRSERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            L+FSSS L+GDK+    S    G R + RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG YKNEGFVEVLAAQQSPENP+WFQGTADA
Sbjct:   34 LSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGEYKNEGFVEVLAAQQSPENPDWFQGTADA 193          

HSP 2 Score: 74.3294 bits (181), Expect = 3.819e-85
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQA
Sbjct:  194 VRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQA 228          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 1.106e-84
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 2
Query:  116 LAFSSSQLSGDKIFSKAVTGDRRSE----RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            L+FSSS  S D   S   T  R  +    R PI+VSP+AVSDS+NSQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA
Sbjct:   33 LSFSSSVTSSDDKISLKSTVSRLCKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192          

HSP 2 Score: 74.3294 bits (181), Expect = 1.106e-84
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQA
Sbjct:  193 VRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQA 227          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 4.175e-84
Identity = 131/155 (84.52%), Postives = 142/155 (91.61%), Query Frame = 2
Query:  125 SSSQLSGDKIFSKAVTGDRRSE--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            SSSQLSG+KI + +  G  R     + + ++P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENPNWFQGTADA
Sbjct:   26 SSSQLSGNKILTVSGNGAPRGRCTLKHVFLTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENPNWFQGTADA 180          

HSP 2 Score: 74.3294 bits (181), Expect = 4.175e-84
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQA
Sbjct:  181 VRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQA 215          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 248.825 bits (634), Expect = 3.204e-81
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 2
Query:  191 RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            RRP+V SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY +N+GGYKNEGFVEVLAAQQSP+NPNWFQGTADA
Sbjct:   56 RRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADA 186          

HSP 2 Score: 74.7146 bits (182), Expect = 3.204e-81
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNV+EFL+LAGDHLYRMDYE+FIQA
Sbjct:  187 VRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQA 221          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 7.770e-80
Identity = 120/131 (91.60%), Postives = 126/131 (96.18%), Query Frame = 2
Query:  191 RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            RRP   SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADA
Sbjct:   55 RRPFFFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADA 185          

HSP 2 Score: 73.559 bits (179), Expect = 7.770e-80
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQA
Sbjct:  186 VRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQA 220          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.565e-68
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 2
Query:  230 SKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            S +    L+P    SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV TQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADA
Sbjct:   28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADA 145          

HSP 2 Score: 73.559 bits (179), Expect = 1.565e-68
Identity = 31/35 (88.57%), Postives = 35/35 (100.00%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQA
Sbjct:  146 VRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQA 180          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGS2_VICFA7.067e-9088.46Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU1.569e-8989.94Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA2.052e-8672.86Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU2.927e-8585.63Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC3.819e-8585.00Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH1.106e-8484.38Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA4.175e-8484.52Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ3.204e-8192.37Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU7.770e-8091.60Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT1.565e-6886.44Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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