CF417169

Overview
NameCF417169
Unique NameCF417169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417169_ssr1 microsatellite CF417169_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:126..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.546e-68
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 2 
Query:  323 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 604
            GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+V
Sbjct:   87 GEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180

HSP 2 Score: 96.6709 bits (239), Expect = 4.546e-68
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:   64 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLD 321
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL+
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLN 86
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G
Sbjct:   58 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLG 135
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 586
            TGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A
Sbjct:   69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHA 153
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.510e-17
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   79 TGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156

HSP 2 Score: 23.0978 bits (48), Expect = 3.510e-17
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR ++L
Sbjct:   58 WYGPDRVLYL 67
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.514e-17
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147

HSP 2 Score: 22.7126 bits (47), Expect = 3.514e-17
Identity = 11/24 (45.83%), Postives = 13/24 (54.17%), Query Frame = 1 
Query:  247 WYGPDRRIFLPEGLLDRSEIPEYL 318
            WYGPDR  +L        +IP YL
Sbjct:   49 WYGPDRPKYLGP---FSDQIPSYL 69
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.560e-17
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   83 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160

HSP 2 Score: 23.0978 bits (48), Expect = 4.560e-17
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR ++L
Sbjct:   62 WYGPDRVLYL 71
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.568e-17
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 586
            TGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A
Sbjct:   68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHA 152

HSP 2 Score: 21.557 bits (44), Expect = 4.568e-17
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   47 WYGPDRPKYL 56
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.568e-17
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 586
            TGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A
Sbjct:   68 TGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHA 152

HSP 2 Score: 21.557 bits (44), Expect = 4.568e-17
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   47 WYGPDRPKYL 56
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.929e-17
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G
Sbjct:   83 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 160

HSP 2 Score: 22.7126 bits (47), Expect = 5.929e-17
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR ++L
Sbjct:   62 WYGPDRVMYL 71
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.935e-17
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 151

HSP 2 Score: 21.1718 bits (43), Expect = 5.935e-17
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   53 WYGPDRVKYL 62
The following BLAST results are available for this feature:
BLAST of CF417169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB26_ARATH4.546e-6888.30Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_CHLRE2.678e-1755.70Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_LEMGI2.678e-1752.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY3.510e-1751.90Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB21_GOSHI3.514e-1751.90Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_PINSY4.560e-1751.90Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_ORYSJ4.568e-1750.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.568e-1750.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY5.929e-1751.90Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PEA5.935e-1751.19Chlorophyll a-b binding protein AB80, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-099 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417169 ID=CF417169; Name=CF417169; organism=Citrus sinensis; type=EST; length=604bp
AGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCAC
TCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATG
TCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACT
TTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAA
GTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGT
ATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCT
GAGATCCCTGAGTACTTGGACCGGAGAAGTTCCCGGAGACTATGGTTACG
ATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCA
TATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCAT
CATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTG
TCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTAC
TTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGAT
TGTT
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