CF417171
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 6.698e-104 Identity = 185/231 (80.09%), Postives = 198/231 (85.71%), Query Frame = 2 Query: 2 KDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGXXXXXXXXXXXXXYWNLE--LESKLPXAXGGYVKDL 688 +DA LLASQD+++WPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVI+TGDNGTIDGQG LWWQ+FH GKLKYTRPYLIE MY+ +IQIS+LTLLNSPSWNVHPVYS NIL+QGITI+APV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSA IALGSEMSGG N E + K GGYVKD+ Sbjct: 124 RDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAI---NSESGIRIKTGIGRGGYVKDI 351
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19 Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 2 Query: 113 IFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469 I T++ +++ GD G I+GQG+ WW+ HKG +RP ++F +N+++S LT L+SP ++H + + + + I AP +SPNTDGI+ + +N I+DC I +GDDC+A+ SG Sbjct: 107 ILFTDIEGLVIEGD-GEINGQGSSWWE--HKG----SRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 2 Query: 128 LTDVIVTGDNGTIDGQGALWWQQFHKGKLKYT------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 535 LTD + G G IDGQG WW K T RP I+ ++ ++ + LTL NSP +++ + +QGI I AP SPNTDGI+ + IE C I +GDDCVAV +G + + I+ LTC Sbjct: 146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2 Query: 128 LTDVIVTGDNGTIDGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469 LTD + G G IDGQG WW G+ K RP I+ Y+ ++ + LTL+NSP +++ + +QG+ I AP SPNTDGI+ + IE C I +GDDC+A+ +G Sbjct: 145 LTDFNLMG-TGVIDGQGQQWWA----GQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2 Query: 263 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG--WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGG 586 Q+ T+ N+ SW +HP ++ TIIAP SPNTDG NP+SC N I GDDC+AVK+G + + T+ + +R + P + +GSEMSGG Sbjct: 34 QLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRH-CLMQPGHGGLVIGSEMSGG 142
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 2 Query: 149 GDNGTIDGQGALWWQQF---HKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469 GD G +DG G WWQ +K K P + F + ++ + +L + N+ + SN+ V + + AP SPNTDGI+ + N R+ + I +GDDC++++SG Sbjct: 163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 2 Query: 158 GTIDGQGALWWQ--QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 535 GT DG+G W+ HK P + F + DN +I +T L++ +++ + + N+ I IIAP SPNTDGI+ C +I + I +GDDC++V G K L+I ++ C Sbjct: 113 GTFDGEGNAAWKANNCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDG-----------MKNLLIEKVVC 229
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 2 Query: 158 GTIDGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS 580 G IDGQG WW G+ K+ RP I+F ++ + I L L+NSP +++ + + GI+I AP SPNTDGI+ + N ++ I +GDDCVA+ +G + +VI L C + +I +LG E S Sbjct: 154 GVIDGQGKQWWA----GQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENS 290
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11 Identity = 38/114 (33.33%), Postives = 65/114 (57.02%), Query Frame = 2 Query: 134 DVIVTGDNGTIDGQGALWWQQFHKGKLKYTR--PYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469 ++++TG GT G+G W+ GK P ++F N++I+ ++ +N+ ++++ V + N+ +Q I + AP SPNTDGI+ + N I D I +GDDCV+V G Sbjct: 137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 134 DVIVTGDNGTIDGQGALWWQQFHKGKLKYT---RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGI 487 ++++TG G +DGQG W + K KY P + + +N ++S +TLLNS ++++ N+L++ +T+ AP SPNTDGI+ + I + I GDDC+++ G + I Sbjct: 129 NLVITG-KGNLDGQGPAVWSKNSCTK-KYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI 247 The following BLAST results are available for this feature:
BLAST of CF417171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417171 ID=CF417171; Name=CF417171; organism=Citrus sinensis; type=EST; length=716bpback to top |