CF417171

Overview
NameCF417171
Unique NameCF417171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7056 contig Csv1_Contig7056:512..1223. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 6.698e-104
Identity = 185/231 (80.09%), Postives = 198/231 (85.71%), Query Frame = 2
Query:    2 KDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGXXXXXXXXXXXXXYWNLE--LESKLPXAXGGYVKDL 688
            +DA LLASQD+++WPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVI+TGDNGTIDGQG LWWQ+FH GKLKYTRPYLIE MY+ +IQIS+LTLLNSPSWNVHPVYS NIL+QGITI+APV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSA IALGSEMSGG               N E  +  K     GGYVKD+
Sbjct:  124 RDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAI---NSESGIRIKTGIGRGGYVKDI 351          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 47/119 (39.50%), Postives = 77/119 (64.71%), Query Frame = 2
Query:  113 IFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469
            I  T++  +++ GD G I+GQG+ WW+  HKG    +RP  ++F   +N+++S LT L+SP  ++H    + + +  + I AP +SPNTDGI+  + +N  I+DC I +GDDC+A+ SG
Sbjct:  107 ILFTDIEGLVIEGD-GEINGQGSSWWE--HKG----SRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  128 LTDVIVTGDNGTIDGQGALWWQQFHKGKLKYT------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 535
            LTD  + G  G IDGQG  WW    K     T      RP  I+  ++ ++ +  LTL NSP +++       + +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC
Sbjct:  146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTC 275          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  128 LTDVIVTGDNGTIDGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469
            LTD  + G  G IDGQG  WW     G+ K            RP  I+  Y+ ++ +  LTL+NSP +++       + +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G
Sbjct:  145 LTDFNLMG-TGVIDGQGQQWWA----GQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG 263          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  263 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG--WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGG 586
            Q+   T+ N+ SW +HP    ++     TIIAP  SPNTDG NP+SC N  I       GDDC+AVK+G    +    +   T+ + +R    + P    + +GSEMSGG
Sbjct:   34 QLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRH-CLMQPGHGGLVIGSEMSGG 142          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = 2
Query:  149 GDNGTIDGQGALWWQQF---HKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469
            GD G +DG G  WWQ     +K K     P  + F  + ++ + +L + N+    +     SN+ V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG
Sbjct:  163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG 272          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 2
Query:  158 GTIDGQGALWWQ--QFHKGKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTC 535
            GT DG+G   W+    HK       P  + F + DN +I  +T L++ +++ + +   N+    I IIAP  SPNTDGI+   C   +I +  I +GDDC++V  G            K L+I ++ C
Sbjct:  113 GTFDGEGNAAWKANNCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDG-----------MKNLLIEKVVC 229          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 50/152 (32.89%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  158 GTIDGQGALWWQQFHKGKLKYT----------RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI-ALGSEMS 580
            G IDGQG  WW     G+ K+           RP  I+F ++  + I  L L+NSP +++       + + GI+I AP  SPNTDGI+  +  N  ++   I +GDDCVA+ +G           +  +VI  L C   +  +I +LG E S
Sbjct:  154 GVIDGQGKQWWA----GQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENS 290          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 38/114 (33.33%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  134 DVIVTGDNGTIDGQGALWWQQFHKGKLKYTR--PYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 469
            ++++TG  GT  G+G   W+    GK       P  ++F    N++I+ ++ +N+ ++++  V + N+ +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V  G
Sbjct:  137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRG 249          
BLAST of CF417171 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  134 DVIVTGDNGTIDGQGALWWQQFHKGKLKYT---RPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGI 487
            ++++TG  G +DGQG   W +    K KY     P  +   + +N ++S +TLLNS  ++++     N+L++ +T+ AP  SPNTDGI+    +   I +  I  GDDC+++  G  +  I
Sbjct:  129 NLVITG-KGNLDGQGPAVWSKNSCTK-KYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNI 247          
The following BLAST results are available for this feature:
BLAST of CF417171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PGLR_VITVI6.698e-10480.09Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR3_ARATH3.892e-1939.50Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_JUNAS6.431e-1436.62Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR2_CHAOB6.431e-1437.10Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR_RHIRD8.399e-1438.18Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
ADPG2_ARATH3.192e-1332.73Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR_BRANA2.702e-1232.03Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR2_CRYJA1.027e-1132.89Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR1_ARATH1.751e-1133.33Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR2_MAIZE6.655e-1132.23Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-101 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_C2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417171 ID=CF417171; Name=CF417171; organism=Citrus sinensis; type=EST; length=716bp
CAAAGATGCTTTTCTTCTAGCTTCTCAGGATTTGAACGAATGGCCCGTGA
TCAAGCCTCTGCCTTCCTACGGTCGAGGAAGGGATGCAGCTGCTGGAAGG
TACACGAGTCTCATATTTGGAACCAATCTGACTGATGTCATTGTTACAGG
GGACAATGGCACGATCGACGGTCAGGGTGCACTTTGGTGGCAGCAATTCC
ACAAGGGCAAGCTAAAATACACTCGGCCTTACCTGATTGAATTCATGTAC
ACTGACAATATCCAAATCTCAAGTCTAACGCTGCTGAATTCACCATCATG
GAATGTTCATCCTGTTTACAGCAGTAATATTCTCGTGCAAGGGATTACCA
TCATTGCCCCTGTTACATCTCCAAACACAGATGGAATCAACCCAGATTCT
TGCACCAATACTAGAATTGAAGACTGCTACATAGTCTCTGGAGATGATTG
TGTGGCAGTAAAAAGCGGATGGGACGAGTATGGAATTGCATATGGAATGC
CCACAAAACAACTAGTCATCAGACGGCTGACATGCATTTCACCGTACAGT
GCCACCATCGCATTAGGCAGCGAGATGTCAGGTGGGNATTCAAGACGTCA
GAGCTGAAGACATCAAAGCCATCAATACTGGAATCTGGAGTTAGAATCAA
AACTGCCGTANGCANAAGGAGGGTATGTTAAAGACCTTTTACGTAAGAGG
AATGACCATGCACACA
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