CF417202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 6.289e-63 Identity = 122/177 (68.93%), Postives = 131/177 (74.01%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ GR++MRKT +K+ SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP Sbjct: 13 FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRIAGGP 182 HSP 2 Score: 23.0978 bits (48), Expect = 6.289e-63 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 200 GLADDPEAF 208 HSP 3 Score: 75.0998 bits (183), Expect = 3.559e-13 Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L + + G LGEV DPLY Sbjct: 133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLY 191
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 6.458e-63 Identity = 122/177 (68.93%), Postives = 132/177 (74.58%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ G+++MRKT SK+ VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP Sbjct: 13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGP 182 HSP 2 Score: 75.485 bits (184), Expect = 1.066e-13 Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---GPLGEVVDPLY 191 HSP 3 Score: 21.557 bits (44), Expect = 1.066e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 200 GLAEDPEAF 208
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 8.434e-63 Identity = 122/177 (68.93%), Postives = 132/177 (74.58%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ G+++MRKT SK+ VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP Sbjct: 12 FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGP 181 HSP 2 Score: 75.485 bits (184), Expect = 1.066e-13 Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 132 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---GPLGEVVDPLY 190 HSP 3 Score: 21.557 bits (44), Expect = 1.066e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 199 GLAEDPEAF 207
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 2.454e-62 Identity = 120/175 (68.57%), Postives = 129/175 (73.71%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F G+AV L+PS E++ GR+SMRKT +K V+S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP Sbjct: 13 FAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVILMGAVEGYRVAGGP 180 HSP 2 Score: 75.485 bits (184), Expect = 1.066e-13 Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 131 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV--EGYRVAG---GPLGEVVDPLY 189 HSP 3 Score: 21.557 bits (44), Expect = 1.066e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 198 GLAEDPEAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.205e-62 Identity = 121/175 (69.14%), Postives = 128/175 (73.14%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F G+AV L+PS +E+S GRI+MRK +KS S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP Sbjct: 13 FAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRIAGGP 180 HSP 2 Score: 75.0998 bits (183), Expect = 1.385e-13 Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L + + G LGEV DPLY Sbjct: 131 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRIAGGPLGEVVDPLY 189 HSP 3 Score: 21.557 bits (44), Expect = 1.385e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 198 GLAEDPEAF 206
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 5.258e-62 Identity = 122/183 (66.67%), Postives = 130/183 (71.04%), Query Frame = 2 Query: 74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGPAR*SD*PIVP 604 G+AV L+P+ E+ + +MRKT SKSVSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L H W MGAVEGYRIAGGP PI P Sbjct: 5 GQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180 HSP 2 Score: 23.0978 bits (48), Expect = 5.258e-62 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 188 GLADDPEAF 196
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 7.140e-62 Identity = 120/177 (67.80%), Postives = 132/177 (74.58%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ G+++MRKT +K+ +SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AGGP Sbjct: 13 FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGGP 182 HSP 2 Score: 75.485 bits (184), Expect = 1.066e-13 Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV G LGEV DPLY Sbjct: 133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---GPLGEVVDPLY 191 HSP 3 Score: 21.557 bits (44), Expect = 1.066e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 200 GLAEDPEAF 208
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.591e-61 Identity = 120/177 (67.80%), Postives = 131/177 (74.01%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ G+++MRKT +K+ VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW + G G LG P L H W MGAVEGYR+AG P Sbjct: 12 FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGEP 181 HSP 2 Score: 72.4034 bits (176), Expect = 8.643e-13 Identity = 43/64 (67.19%), Postives = 46/64 (71.88%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA L G + E RV LGEV DPLY Sbjct: 132 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---EPLGEVVDPLY 190 HSP 3 Score: 21.557 bits (44), Expect = 8.643e-13 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 199 GLAEDPEAF 207
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 1.591e-61 Identity = 120/177 (67.80%), Postives = 132/177 (74.58%), Query Frame = 2 Query: 68 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSW------MGAVEGYRIAGGP 574 F GKAV L+PS +E++ G+++MRKT SK+ VSS SPWYG +RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW +GG +G LG P L H W MGAVEGYR+AG P Sbjct: 13 FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPS-------LVHAQSILAIWACQVVLMGAVEGYRVAGEP 182 HSP 2 Score: 69.707 bits (169), Expect = 5.384e-12 Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 3 Query: 423 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA----LPGGLGWEPLRVTELLEGRLGEVTDPLY 602 FK G+QIFS+GGLDYLGNPSL+HAQSILAIWA L G + E RV LGEV DPLY Sbjct: 133 FKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAV--EGYRVAG---EPLGEVVDPLY 191 HSP 3 Score: 21.557 bits (44), Expect = 5.384e-12 Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLA+DPEAF Sbjct: 200 GLAEDPEAF 208
BLAST of CF417202 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 1.981e-61 Identity = 123/177 (69.49%), Postives = 130/177 (73.45%), Query Frame = 2 Query: 74 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWVQGGGPDLQRGRA*LLGEPKPDPRPEHLGHLGFARWSWMGAVEGYRIAGGPAR*SD*PIVP 604 GKAV L PS E+ GR+SMRKT +K VSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW + G G LG P L + + MGAVEGYRIAGGP PI P Sbjct: 16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILA-IWATQVILMGAVEGYRIAGGPLGEVTDPIYP 188 HSP 2 Score: 23.0978 bits (48), Expect = 1.981e-61 Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 1 Query: 628 GLADDPEAF 654 GLADDPEAF Sbjct: 196 GLADDPEAF 204 The following BLAST results are available for this feature:
BLAST of CF417202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417202 ID=CF417202; Name=CF417202; organism=Citrus sinensis; type=EST; length=655bpback to top |