CF417204

Overview
NameCF417204
Unique NameCF417204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417204_ssr40 microsatellite CF417204_ssr40:40..49. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417204_ssr70 microsatellite CF417204_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig443 contig Csv1_Contig443:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417204 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.693e-42
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  113 PEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGRKLAVRVENXXXXXXXXXIKEKSGTPSTLYRGQLVLP-AVFAIGAVWD 544
            P V A ++ VG N+ W  N+NYTIWA+ KHFY GDWL+FV+DRNQ N+LEVNKTDYE C +DHP+ NWT GAGRD+V LN T+HYY + GKG CYGG KL+V+VE          +K            Q ++P ++FA  A+WD
Sbjct:   22 PGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMWD 166          
BLAST of CF417204 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  125 ATRWIVGANQGWTNNV--NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGRKLAVRVE 427
            AT   VG + GWT  V  +Y  WA    F+ GD L F Y+    NVL+V++  ++SCNS  P  ++T+GA  D +PL     +YF+ G  G C  G+K+ ++V+
Sbjct:    1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 102          
BLAST of CF417204 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  125 ATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGRKLAVRVE 427
            AT + VG   GW    +Y+ WA DK F  GD L F Y      V EV ++DY+SC S + +   +TGA    +PL     +YFI G  G   GG KL+++V+
Sbjct:   24 ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGA--TTIPLKKAGKHYFICGVPGHSTGGMKLSIKVK 123          
The following BLAST results are available for this feature:
BLAST of CF417204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LAML_ARATH1.693e-4253.10Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
MAVI_CUCPE9.063e-1238.46Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
BCP_PEA1.546e-1139.22Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-134 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F3 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417204 ID=CF417204; Name=CF417204; organism=Citrus sinensis; type=EST; length=669bp
GCTTTGAAACTCTTTTTGGAAGGCTGAGAGTGCGGGAGTGAGAGAGAGAA
TGAGGGCAGGAATGACGGTGGCGGCGGCGGCCGTGCTGGTGGTTGCCATG
ACGATTCTGGTGCCGGAGGTGGATGCAACTAGATGGATTGTGGGAGCCAA
CCAAGGTTGGACCAATAACGTGAACTATACCATATGGGCAAAAGATAAGC
ACTTTTACAATGGGGACTGGCTCTTCTTTGTGTATGACAGGAACCAGATG
AATGTGCTAGAGGTGAACAAAACAGACTACGAATCATGCAACTCTGATCA
TCCCCTTCACAACTGGACCACAGGAGCAGGAAGAGATGTGGTTCCTCTGA
ATGTGACCCGGCATTACTACTTCATCAGCGGAAAGGGCTTCTGCTATGGT
GGCAGGAAGTTAGCTGTCCGTGTTGAGAACCCGCCTCCTCCTCCCTCGGC
TTCCCCTATTAAAGAAAAGAGCGGCACACCAAGTACTCTCTACAGAGGCC
AGCTTGTTTTGCCAGCAGTTTTTGCCATTGGTGCTGTCTGGGATGCATTC
GNTCCGGTTCTGGTAACAATGTCAAGCTTAGAATTATTTATAAGGATAAT
CAGAATCTCCTTAGACATTCCTTAAATCTATTTGTGAAAGGAACTGAGTC
CTCTTCCACTTTATTTTTT
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