CF417212

Overview
NameCF417212
Unique NameCF417212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-36
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  126 GLKAGATPARVV--GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKAGA+ +  V  G++ K +A+ V +L++KA+LKDVG                  +EVLLGGDDG LA +P +FSV +GEKI   N AGFPH+  FD DEIP+G
Sbjct:   16 GLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 120          

HSP 2 Score: 77.0258 bits (188), Expect = 6.075e-36
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN  GETY+VTL+EKGTY+FYC PHQGAGMVG VTVN
Sbjct:  126 ISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 6.564e-35
Identity = 53/103 (51.46%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKAG+     V ++ K SAS +P+LSIKA++KDVG                  I+VLLG DDG LA VPS FS+  GEKIV  N AGFPH+  FD D IPSG
Sbjct:   16 GLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSG 118          

HSP 2 Score: 69.707 bits (169), Expect = 6.564e-35
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN  GET+ V L+ KG YSFYC PHQGAGMVG VTVN
Sbjct:  124 ISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.564e-35
Identity = 51/107 (47.66%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  126 GLKAGA----TPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKA      T A+++ +T     +AVP+LS+KA+LK+VG                  +EVLLGG DG LA +P  FSV SGE+IV  N AGFPH+  FD DEIPSG
Sbjct:   17 GLKASGSIKPTTAKIIPTT-----TAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSG 118          

HSP 2 Score: 80.4925 bits (197), Expect = 6.564e-35
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN PGETY VTLTEKGTY FYC PHQGAGMVG VTVN
Sbjct:  124 ISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.458e-33
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKA +     V ++ K SAS +P+LSIKA+LK+VG                  ++VLLG DDG LA VPS FSV +GEKIV  N AGFPH+  FD D +PSG
Sbjct:   16 GLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSG 118          

HSP 2 Score: 67.0106 bits (162), Expect = 3.458e-33
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN  GET+ V L++KG Y+FYC PHQGAGMVG V VN
Sbjct:  124 ISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.073e-31
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKA +T      +T+K  A A P++SIKA+LKDVG                   EVLLG  DG LA VPS  S+ SGEKI   N AGFPH+  FD DE+P+G
Sbjct:   17 GLKASSTTR---AATVKV-AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAG 115          

HSP 2 Score: 74.7146 bits (182), Expect = 1.073e-31
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  EDLLN PGE Y+VTLTEKGTY FYC PH GAGMVG VTVN
Sbjct:  121 ISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 165          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.085e-31
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKA    +      ++ +A A PKL++K++LK+ G                  IEVLLGG DG LA +P+ FS+  GEKIV  N AG+PH+  FD DEIPSG
Sbjct:   16 GLKASTIKSSAT-VRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSG 117          

HSP 2 Score: 74.3294 bits (181), Expect = 3.085e-31
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  +DLLNG GETY V LTE GTYSFYC PHQGAGMVG VTVN
Sbjct:  123 ISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.545e-30
Identity = 50/106 (47.17%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLK   +      ST+  S SA    PKL++K++LKD G                  +EVLLG DDG LA VPS F+V  GEKIV  N AGFPH+  FD DEIPSG
Sbjct:   16 GLKLAVSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPSG 121          

HSP 2 Score: 65.4698 bits (158), Expect = 9.545e-30
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 2
Query:  473 LLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTV 583
            LLNG GETY VTLTE G+Y FYC PHQGAGMVG +TV
Sbjct:  134 LLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.244e-29
Identity = 44/103 (42.72%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLK  A       + +  S S  P+L ++A+LKD G                  +EVLLG  DG LA VPSS  V +GE IV  N AGFPH+  FD DEIP+G
Sbjct:   16 GLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAG 118          

HSP 2 Score: 72.4034 bits (176), Expect = 1.244e-29
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  EDLLN PGETY+V L  KGTY FYC PHQGAGMVG VTVN
Sbjct:  124 ISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.284e-29
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLNGPGETY+VTL+EKGTY+FYC PHQGAGMVG VTVN
Sbjct:   55 ISMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          

HSP 2 Score: 68.5514 bits (166), Expect = 1.284e-29
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IEVLLG DDG LA VP +FSV +GEKI   N AGFPH+  FD DEIP+G
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 49          
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.672e-29
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 2
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTV 583
            I +S EDLLN PGETYAVTL+EKGTYSFYC PHQGAGMVG VTV
Sbjct:   55 ISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTV 98          

HSP 2 Score: 70.4774 bits (171), Expect = 1.672e-29
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IE+ LGGDDG LA VP SF+V +GEKIV  N AGFPH+  FD DE+P+G
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAG 49          
The following BLAST results are available for this feature:
BLAST of CF417212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_SOLLC6.075e-3648.57Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS1_POPNI6.564e-3551.46Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL6.564e-3547.66Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS2_POPNI3.458e-3349.51Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SILPR1.073e-3147.57Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_ARATH3.085e-3143.69Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS1_ARATH9.545e-3047.17Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_PEA1.244e-2942.72Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS2_TOBAC1.284e-2982.22Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_RUMOB1.672e-2984.09Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-142 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417212 ID=CF417212; Name=CF417212; organism=Citrus sinensis; type=EST; length=684bp
AAACCAACCTCCCTTCTCCTCGAGTGTTGATTTCCAATAACTCAAAAAGA
AAAAACAGCANAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGC
AGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAG
CCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAG
CTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGNCAC
AGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTNTTGC
TTGGTGGTGATGATGGGTGCTTGGCTTNTGTTCCNAGCTCTTTCTCTGTC
ANCTCCGGTGAAAAGATTGTGNTCAANAACNATGCTGGGTTCCCACACGA
CGATGNTTTCGATGANGATGAGATTCCGAGTGGGTGTTGATGTTTCCANA
AATCTNCGTGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACTTATG
CTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTNCCCTCAC
CAAGGAGCTGGCATGGTTGGACNAGTGACTGTTAATTAAGTNCACATTCA
GACTTTGTTTGCCTCATCTCATTGGTTATCGNTCTCTTCTTTTTGCATTT
TATGAGTATCATACATATTTTCATTTGGTGAGAA
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