CF417217

Overview
NameCF417217
Unique NameCF417217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:407..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.213e-62
Identity = 121/175 (69.14%), Postives = 131/175 (74.86%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            LEMDAEYEG+VEATGEDYSVEP    RPFRALLDVGL++TTTGNRVF            IPHS+KRFAG+ K+ +QLD E HR YI+ GHVAAYMRTLME  P  Y SHF EYI +GIEAD LE LYKKVHAAIRA P         P  HKRYNLKKLTY+ERKARLVERL AL
Sbjct:  113 LEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNAL 287          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.639e-59
Identity = 112/175 (64.00%), Postives = 132/175 (75.43%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            LEMD EYEG+VEATGED+SVEPT + RPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE HR YIY GHV+ YM+ L E  P    +HF  YI +G+EA+++E +YKKVHAAIRA PN        P EHKRYNLKKLTYEERK +L+ER+KAL
Sbjct:  113 LEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKAL 287          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 112/175 (64.00%), Postives = 132/175 (75.43%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            LEMD EYEG+VEATGED+SVEPT + RPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE HR YIY GHV+ YM+ L E  P    +HF  YI +G+EA+++E LYKKVHAAIRA PN        P +HKRYNLKKLTYEERK +L+ER+KAL
Sbjct:  113 LEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKAL 287          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.092e-58
Identity = 110/173 (63.58%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            +D EYEG+VEATGEDY VEP    RPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD++ HR YIY GHVA YMR++ E  P  + +HF EY+ +GI+AD +E LYKKVHAAIRA P         PA HKRYNLKKLTYE+RKA LVERL AL
Sbjct:  116 LDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 288          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.038e-58
Identity = 109/173 (63.01%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            +D EYEG++EATGEDY VEP    RPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD++ HR YIY GHVA YMR++ E  P  + +HF EY+ +GI+AD +E LYKKVHAAIRA P         PA HKRYNLKKLTYE+RKA LVERL AL
Sbjct:  116 LDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 288          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 4.038e-58
Identity = 109/173 (63.01%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            +D EYEG++EATGEDY VEP    RPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD++ HR YIY GHVA YMR++ E  P  + +HF EY+ +GI+AD +E LYKKVHAAIRA P         PA HKRYNLKKLTYE+RKA LVERL AL
Sbjct:  116 LDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 288          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 75/173 (43.35%), Postives = 106/173 (61.27%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            +D+ Y+GH E TGEDY+VE   +  PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E     Y   F +++  G+ ADNL   Y+KVH+AIRA  +        P+  KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  115 LDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPS--KRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 75/173 (43.35%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    7 MDAEYEGHVEATGEDYSVEPTXNXRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            +D+ Y+GH E TGEDY+VE   +  PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK  +AE HR  I   HVA YM  L E     Y   F +++  G+ ADNL   Y+K HA IRA P+        P+  KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  115 LDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPSPSAKKAAKPS--KRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 68/104 (65.38%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  214 KDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKAL 525
            KDSKQLDAE HR YIY GHVAAYM  LME  P  Y SHF  YI   +  DN+E +YKKVHAAIR  P+       PP  HKRYNLKKLTYEERKA+L+ERL AL
Sbjct:    3 KDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNAL 106          
BLAST of CF417217 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 1
Query:    1 LEMDAEYEGHVEATGEDYSVEPTXNXR-PFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFXKDSKQLDAEXHRXYIYCGHVAAYMRTLMEXXPXXYXSHFCEYIXRGIEADNLEXLYKKVHAAIRAXPNQXXXXXXPPAEHKRYNLKKLTYEERKARLVERLKA 522
            L++D  Y G  E  G++Y+VE   +    FR  LD GL++TTTG R+F            IPHS KRF G+  +SK  +A+ HR +I+  H+A YM+TL E  P  +   F +YI  GI AD +E +YKK H AIRA P++           KR+N  KLT  ERK R V+++KA
Sbjct:  113 LKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
The following BLAST results are available for this feature:
BLAST of CF417217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA1.213e-6269.1460S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH1.639e-5964.0060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH2.796e-5964.0060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ORYSJ3.092e-5863.5860S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ4.038e-5863.0160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI4.038e-5863.0160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL5_CAEEL3.113e-3443.3560S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_CAEBR3.113e-3443.3560S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_SOLME2.231e-3265.3860S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_LYSTE1.107e-3141.7160S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-147 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_G4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417217 ID=CF417217; Name=CF417217; organism=Citrus sinensis; type=EST; length=602bp
CTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGGAGAGGA
CTATTCAGTTGAGCCAACTGANAACNGGAGGCCTTTCCGTGCCCTGCTTG
ATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGCGCTCTT
ANGGGTGCATTGGATGGNGGACTTGATATCCCTCACAGTGAGAAGAGATT
TGCTGGATTCANNAAGGATAGTAAGCAACTTGACGCTGAAGNTCACCGTA
NATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTGATGGAA
NATGANCCAGANAANTACCNNTCTCACTTTTGTGAATACATCNAGAGAGG
TATTGAGGCTGATAACCTTGAANAGTTGTACAAGAAGGTACATGCTGCCA
TCCGTGCANACCCTAACCAGAAGAAATCTGANAAGAAGCCTCCAGCAGAG
CACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAAGGAAAGCCAG
GTTAGTTGAAAGGTTGAAAGCACTCNATGCTGCTGAAGACGATGAAGCCG
ATGAGTGAATGCGATACTAGGAAAGGTTTTGTTTCTTAGTTCAATAGGTT
AT
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