CF417220

Overview
NameCF417220
Unique NameCF417220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig812 contig Csv1_Contig812:16..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417220 vs. ExPASy Swiss-Prot
Match: RPAB2_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.183e-12
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  334 GETDPLXIAMKELRERKIPFTIRRYLPDGSY 426
            GETDPL IA KEL++R++P  IRRYLPDGSY
Sbjct:   95 GETDPLEIARKELKQRRVPIIIRRYLPDGSY 125

HSP 2 Score: 39.2762 bits (90), Expect = 1.183e-12
Identity = 24/60 (40.00%), Postives = 32/60 (53.33%), Query Frame = 3 
Query:  216 ERSSSENFQVHD*IRSVPV----------------ILGTRALQISMNAPVMVELVGGDRP 347
            + +  ENF++ D  ++VP                 +LGTRALQI+M APVMVEL G   P
Sbjct:   40 DNNVDENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDP 99
[Close]
BLAST of CF417220 vs. ExPASy Swiss-Prot
Match: RPAB2_CAEEL (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Caenorhabditis elegans GN=rpb-6 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.536e-12
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  334 GETDPLXIAMKELRERKIPFTIRRYLPDGSY 426
            GETDPL IA KEL++R+IP  +RRYLPDGSY
Sbjct:   94 GETDPLEIARKELKQRRIPIIVRRYLPDGSY 124

HSP 2 Score: 38.891 bits (89), Expect = 1.536e-12
Identity = 24/55 (43.64%), Postives = 30/55 (54.55%), Query Frame = 3 
Query:  231 ENFQVHD*IRSVPV----------------ILGTRALQISMNAPVMVELVGGDRP 347
            ENF++ D  ++VP                 +LGTRALQI+M APVMVEL G   P
Sbjct:   44 ENFELFDQGKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDP 98
The following BLAST results are available for this feature:
BLAST of CF417220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPAB2_CAEBR1.183e-1274.19Probable DNA-directed RNA polymerases I, II, and I... [more]
RPAB2_CAEEL1.536e-1274.19Probable DNA-directed RNA polymerases I, II, and I... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-150 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_G7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417220 ID=CF417220; Name=CF417220; organism=Citrus sinensis; type=EST; length=427bp
CCTGAATTCTTATTTAATAAACTCGACCGGCGACCAAAGAAACTCGAGTA
GTCCACAATGGCCGACGAAGACTACAATGATTTGGACATGGGATACGAGG
ATGAGCCGCCATAGCCTGAAATTGAAGAAGGCGCAGAGGAGGATGCAGAA
NACATCAACAATGATGACNTCAATGGAGAGCCTATTGAGACCGAGGAAAA
GGAGGAGCAGGAGCAGAAAGAAGCAGCTCGGAAAACTTCCAAGTACATGA
CTAAATACGTAGCGTGCCAGTAATATTGGGTACCCGAGCTCTGCAAATCA
GTATGAATGCTCCTGTGATGGTTGAGTTGGTAGGGGGAGACCGACCCACT
TGANATTGCTATGAAGGAGCTACGCGAGCGGAAAATTCCCTTCACAATCC
GTCGCTACCTCCCTGATGGAAGTTATG
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