CF417223

Overview
NameCF417223
Unique NameCF417223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11053 contig Csv1_Contig11053:106..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_DANRE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Danio rerio GN=hibch PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3
Query:   93 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            VL E++G   ++TLNRP+ LN ++  ++  +   L+KW+KD    +VI+KG G +AF AGGD++   +   + +    V +R  Y L + I TY+K  VAL +GITMGGG  L V  +F V TEKT+F+ PE  IG
Sbjct:   34 VLFEKVGKAGVITLNRPKALNALTLNMIRHIYPQLKKWDKDSETDIVIIKGAGEKAFCAGGDIRAIAEAGKAGNLLSQVFFREEYILNNTIGTYQKPYVALINGITMGGGVGLSVHGQFRVATEKTLFAMPETGIG 169          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_BOVIN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Bos taurus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.242e-23
Identity = 61/162 (37.65%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   15 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            F S++  N+++  +      +   +V+L E  G   ++TLNRPR LN ++  ++  +   L+KWE+D +  L+I+KG G +AF AGGD++   + RN+    L  ++R  Y L + I + +K  +AL HGITMGGG  + V  +F V TEK+VF+ PE +IG
Sbjct:   13 FNSYKRTNIILQHLKMSNHTDAAAEVLL-ERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIRALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVATEKSVFAMPETAIG 173          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_HUMAN (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = 3
Query:   15 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            F +F+  N ++  +      +  E+V+L E+ G   ++TLNRP+ LN ++  ++  +   L+KWE+D    L+I+KG G +AF AGGD+++  +   +K     V +R  Y L + + + +K  VAL HGITMGGG  L V  +F V TEK +F+ PE +IG
Sbjct:   13 FNAFKRTNTILHHLRMSKHTDAAEEVLL-EKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIG 173          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.366e-21
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   93 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            VL ++ G   ++TLNRP+ LN +S K++  +   ++ WE+D    L+I+KG G +AF AGGD++   D   + D+     +R  Y L + I T KK  VAL  GITMGGG  L V   F V TEKTVF+ PE +IG
Sbjct:   37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIG 172          

HSP 2 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  445 QLSRKKLFFPLQKQVLGFILXCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNT 678
            +++ +K  F + +  +G     G  +   RL G +G  LALTG RL G++++ AG+ATHFV S KLPELEK LI L +
Sbjct:  156 RVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIATHFVESGKLPELEKDLIALKS 233          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_SCHPO (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe GN=ehd3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 3
Query:   15 FLSFESANLLID*MAQGVVKNP------DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKM----FYDGRNSKDSCLXVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT 503
            FLS  +++     M++  ++NP          VL E     R+ TLNRP+ LN I+  ++  +   L   E+ + AK++I+KG GR+FS+GGD+K       DG+  +        + Y L H + TY+K  VAL +GITMGGG+ L + + F +  E T+F+ PE  IG+ T
Sbjct:   30 FLSLNASST----MSRAFIRNPKFYSTSSNDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPE--VRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFT 196          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  111 GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            G   ++TLNRP+ LN ++  ++ L+   L  WE+D    LVI+KGVG +AF AGGD++   D   + D      +R  Y L + I TYKK  VAL  GITMGGG  L V   F V +E T+F+ PE +IG
Sbjct:   43 GCAGVITLNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVTDAGKAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIG 172          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_RAT (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Rattus norvegicus GN=Hibch PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 59/162 (36.42%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   15 FLSFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGV-GRAFSAGGDLKMFYDGRNSKDSCLXVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            F S   A++++  +     K+ +   VL E  G   ++TLNRP+ LN +S  ++  +   L+KWE+D    L+I+KG  G+AF AGGD+K   + + +  +    ++R  Y L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG
Sbjct:   13 FSSIRRASVILQHLRMS--KHTETAEVLLERRGCAGVITLNRPKLLNALSLNMIRQIYPQLKKWERDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKAGQTLSQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIG 172          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 58/160 (36.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   21 SFESANLLID*MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            SF  A++++  +   +     E  VL E  G   ++TLNRP+ LN +S  ++  +   L+ WE+D    L+I+KG G +AF AGGD+K   + + ++ +    ++R  Y L + I + +K  VAL  GITMGGG  L V  +F V TE+++F+ PE  IG
Sbjct:   15 SFRRASVILQHLRMSMHTEAAE--VLLERRGCGGVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIG 172          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_YEAST (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Saccharomyces cerevisiae GN=EHD3 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.042e-18
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  120 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGR--AFSAGGDLKMFYDGRNSKDSCLXVVYRM--YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF 497
            R++TLNRP++LN +++++   + + L ++ K D   LVI+K   R  +F AGGD+        +K+    + +    Y L   I TY K  V    GITMGGG  L +   F + TE T ++ PE  IGF
Sbjct:   48 RVITLNRPKKLNALNAEMSESMFKTLNEYAKSDTTNLVILKSSNRPRSFCAGGDVATVAIFNFNKEFAKSIKFFTDEYSLNFQIATYLKPIVTFMDGITMGGGVGLSIHTPFRIATENTKWAMPEMDIGF 177          

HSP 2 Score: 36.965 bits (84), Expect = 1.042e-18
Identity = 22/64 (34.38%), Postives = 32/64 (50.00%), Query Frame = 1
Query:  490 LGFILXCGFSFIHSRLP------GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 663
            +GF    G +F   R+         +  +L LTG  + G +    GLA+H+V SE L  L+KRL
Sbjct:  175 IGFFPDVGSTFALPRIVTLANSNSQMALYLCLTGEVVTGADAYMLGLASHYVSSENLDALQKRL 238          
BLAST of CF417223 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  111 GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLXVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIG 494
            G   ++TLNRP+ LN ++  ++  +   L+ WE+D    LVI+KG G +AF AGGD++   D     D      +R  Y L + I T KK  VA+  GITMGGG  L V   F V +EKT+F+ PE +IG
Sbjct:   43 GCAGVITLNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVTDAGKVGDRLAQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIG 172          
The following BLAST results are available for this feature:
BLAST of CF417223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HIBCH_DANRE7.242e-2342.653-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_BOVIN7.242e-2337.653-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_HUMAN2.107e-2237.043-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_CHICK1.366e-2143.383-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_SCHPO2.576e-2035.263-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENTR4.394e-2043.853-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_RAT7.495e-2036.423-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_MOUSE6.345e-1936.253-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_YEAST1.042e-1835.383-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
HIBCH_XENLA4.112e-1841.543-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-153 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417223 ID=CF417223; Name=CF417223; organism=Citrus sinensis; type=EST; length=695bp
TCCTCTCTGTTCTTTTTCTTAGCTTTGAATCAGCTAACCTACTAATTGAC
TAAATGGCGCAAGGTGTTGTTAAGAACCCAGATGAGCAGGTTGTTCTTGG
AGAAGAAATAGGCAATGTGAGACTGGTCACCTTAAACCGGCCTCGCCAAT
TGAATGTCATCTCATCTAAAGTGGTGTCTCTATTGGCAGAATACTTGGAA
AAATGGGAAAAAGATGACCGAGCTAAGCTTGTAATAGTCAAGGGAGTTGG
CCGAGCTTTTTCTGCTGGTGGGGATTTGAAAATGTTTTATGATGGGAGGA
ACTCAAAGGATTCCTGCCTCNAAGTGGTCTATAGAATGTATTGGCTTTGC
CATCACATTCATACCTATAAGAAAACCCAGGTAGCTCTTGCTCATGGAAT
TACAATGGGAGGAGGCGCGTCTTTGATGGTTCCTCTGAAATTCTCAGTTG
TCACGGAAAAAACTGTTTTTTCCACTCCAGAAGCAAGTATTGGGTTTCAT
ACTGNATTGTGGTTTCTCATTCATCCATTCTCGTCTCCCTGGACATTTAG
GGGAATTCCTGGCCTTAACTGGGGCAAGGCTAAATGGCAAGGAACTGGTT
GCAGCTGGGCTAGCTACCCATTTTGTCCCTTCTGAGAAATTGCCCGAGCT
AGAAAAGCGTCTGATAGGCTTAAACACTGGTGATGAAATTGCAGT
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