CF417226

Overview
NameCF417226
Unique NameCF417226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417226 vs. ExPASy Swiss-Prot
Match: FLA17_ARATH (Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.233e-43
Identity = 72/167 (43.11%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  202 LVPRSVQEDFNRRRNLRSISAVLPQGAAGGGPQDSPFKETGPLRVPAGAPPILPIYDXXXXXXXXXXXXXXXXXXXXXXFQRREGRVKGFHSHAVAIYGGYNEMADILVELDVVSDGNGXVWVSEGTVLDGAGPERTRRWRSLTTDQLERTGGRRNRLFITTFIPEY 702
            L+PRSVQEDFNRRR+L+SISAVLP+GA    P+ +  K+     VPAG+PP LPI                        F   E +VK F  H +  YGGYNEMADILV L  ++   G + VSEG VL    P        LTTDQL   G     ++    IPEY
Sbjct:  184 LIPRSVQEDFNRRRSLQSISAVLPEGAPEVDPRTNRLKKPA-APVPAGSPPALPIQSAMAPGPSLAPAPAPGPGGKQHHFD-GEAQVKDF-IHTLLHYGGYNEMADILVNLTSLATEMGRL-VSEGYVLTVLAP-NDEAMAKLTTDQLSEPGAPEQIVYY-HIIPEY 344          

HSP 2 Score: 95.5153 bits (236), Expect = 3.233e-43
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query:    3 FHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLFSP 209
            FHI+P+R+GS  WP E+SG  KH+TL ND V LS+   K+++  AEI RPDD+TRPDG+IHGIERL  P
Sbjct:  118 FHIIPNRVGSNQWPSEESGRVKHHTLGNDQVRLSNGQGKKMVDLAEIIRPDDLTRPDGLIHGIERLLIP 186          
BLAST of CF417226 vs. ExPASy Swiss-Prot
Match: FLA18_ARATH (Fasciclin-like arabinogalactan protein 18 OS=Arabidopsis thaliana GN=FLA18 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.909e-41
Identity = 73/168 (43.45%), Postives = 90/168 (53.57%), Query Frame = 1
Query:  202 LVPRSVQEDFNRRRNLRSISAVLPQGAAGGGPQDSPFKETG-PLRVPAGAPPILPIYDXXXXXXXXXXXXXXXXXXXXXXFQRREGRVKGFHSHAVAIYGGYNEMADILVELDVVSDGNGXVWVSEGTVLDGAGPERTRRWRSLTTDQLERTGGRRNRLFITTFIPEY 702
            L+PRSVQEDFNRRRNLRSISAVLP+GA    P+ +  K++   + VPAG+PP+LPI                        F   + +VK F  H +  YGGYNEMADILV L  ++   G + VSEG VL    P        LTTDQL   G     ++    IPEY
Sbjct:  185 LIPRSVQEDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVLPIESAMAPGPSLAPAPAPGPGGAHKHF-NGDAQVKDF-IHTLLHYGGYNEMADILVNLTSLATEMGRL-VSEGYVLTVLAP-NDEAMGKLTTDQLSEPGAPEQIMYY-HIIPEY 347          

HSP 2 Score: 84.3445 bits (207), Expect = 2.909e-41
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 3
Query:    6 HILPSRIGSRNWPDEKSGSRKHNTLWNDFV-HLSS---KSSKRLIGSAEIFRPDDITRPDGVIHGIERLFSP 209
            HI+P R+GS  WP+E SG  KH TL +D V HLS     + KRL+ SA I RPDD+TRPDG+IHGIERL  P
Sbjct:  116 HIIPKRVGSNQWPEENSGRVKHVTLGHDQVLHLSKLKGTNGKRLVNSAVITRPDDLTRPDGLIHGIERLLIP 187          
BLAST of CF417226 vs. ExPASy Swiss-Prot
Match: FLA16_ARATH (Fasciclin-like arabinogalactan protein 16 OS=Arabidopsis thaliana GN=FLA16 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.438e-41
Identity = 75/167 (44.91%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  202 LVPRSVQEDFNRRRNLRSISAVLPQGAAGGGPQDSPFKETGPLRVPAGAPPILPIYDXXXXXXXXXXXXXXXXXXXXXXFQRREGRVKGFHSHAVAIYGGYNEMADILVELDVVSDGNGXVWVSEGTVLDGAGPERTRRWRSLTTDQLERTGGRRNRLFITTFIPEY 702
            L+PRSVQEDFNRRR+LRSISAV+P+GA    P+    K+  P  VPAGAPP+LPIYD                      F   + +VK F  H +  YGGYNEMADILV L  ++   G + VSEG VL    P        LTTDQL   G     ++    IPEY
Sbjct:  173 LIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTHRLKKPSP-AVPAGAPPVLPIYDAMSPGPSLAPAPAPGPGGPRGHF-NGDAQVKDF-IHTLLHYGGYNEMADILVNLTSLATEMGRL-VSEGYVLTVLAP-NDEAMAKLTTDQLSEPGAPEQIMYY-HIIPEY 333          

HSP 2 Score: 77.0258 bits (188), Expect = 6.438e-41
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 3
Query:    3 FHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLFSP 209
            FHILP RI S  WP   S S  H TL ND +HL+   +   + SAEI RPDD+ RPDG+IHGIERL  P
Sbjct:  110 FHILPKRITSPQWP---SLSHHHRTLSNDHLHLTVDVNTLKVDSAEIIRPDDVIRPDGIIHGIERLLIP 175          
BLAST of CF417226 vs. ExPASy Swiss-Prot
Match: FLA15_ARATH (Fasciclin-like arabinogalactan protein 15 OS=Arabidopsis thaliana GN=FLA15 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.062e-37
Identity = 74/167 (44.31%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  202 LVPRSVQEDFNRRRNLRSISAVLPQGAAGGGPQDSPFKETGPLRVPAGAPPILPIYDXXXXXXXXXXXXXXXXXXXXXXFQRREGRVKGFHSHAVAIYGGYNEMADILVELDVVSDGNGXVWVSEGTVLDGAGPERTRRWRSLTTDQLERTGGRRNRLFITTFIPEY 702
            L+PRSVQEDFNRRR+LRSI+AVLP+GA    P+    K+  P  +PAGAPP+LP+YD                      F   E +VK F  H +  YGGYNEMADILV L  ++   G + VSEG VL    P        LTTDQL   G     ++    IPEY
Sbjct:  165 LIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTHRLKKK-PAPIPAGAPPVLPVYDAMSPGPSLAPAPAPGPGGPRHHF-NGEAQVKDF-IHTLLHYGGYNEMADILVNLTSLATEMGRL-VSEGYVLTVLAP-NDEAMAKLTTDQLSEPGAPEQIMYY-HIIPEY 325          

HSP 2 Score: 67.0106 bits (162), Expect = 1.062e-37
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 3
Query:    3 FHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLFSP 209
            FHILP RI S   P   S    H TL ND +H ++      + SAEI +PDD+TRPDG+IHGIERL  P
Sbjct:  106 FHILPKRITS---PQFSSAVVSHRTLSNDHLHFTNGK----VNSAEITKPDDLTRPDGIIHGIERLLIP 167          
The following BLAST results are available for this feature:
BLAST of CF417226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FLA17_ARATH3.233e-4343.11Fasciclin-like arabinogalactan protein 17 OS=Arabi... [more]
FLA18_ARATH2.909e-4143.45Fasciclin-like arabinogalactan protein 18 OS=Arabi... [more]
FLA16_ARATH6.438e-4144.91Fasciclin-like arabinogalactan protein 16 OS=Arabi... [more]
FLA15_ARATH1.062e-3744.31Fasciclin-like arabinogalactan protein 15 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-156 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H3 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417226 ID=CF417226; Name=CF417226; organism=Citrus sinensis; type=EST; length=709bp
TGTTCCACATTCTCCCCAGCCGAATCGGATCCCGCAACTGGCCCGACGAG
AAATCCGGCTCCAGAAAGCACAACACTCTCTGGAACGATTTCGTCCACTT
GTCGAGCAAGAGCAGTAAAAGACTCATCGGTTCGGCTGAGATTTTCCGAC
CCGACGACATTACCCGTCCCGACGGTGTAATCCACGGAATCGAGCGGCTG
TTTAGTCCCGCGATCGGTACAAGAGGACTTCAACCGCAGGCGGAATCTCC
GTTCCATTTCCGCCGTGCTTCCGCAAGGGGCNGCCGGAGGTGGACCCCAG
GACTCACCGTTTAAAGAAACCGGGCCGCTCCGGGTTCCCGCTGGTGCCCC
TCCGATTCTTCCTATATACGACGCGATGGCTCCCGGTCCCTCGCTAGCAC
CGGCTCCGGCTCCAGNGACCCGGCGGAGCGCACCGTCATTTCAACGGCGA
GAGGGCAGGGTGAAAGGATTTCATTCACACGCTGTTGCCATTTACGGAGG
GTACAACGAAATGGCGGATATTCTGGTTGAACTTGACGTCGTTAGCGACG
GAAATGGGNCCGTTTGGGTGTCCGAGGGAACCGTCCTNGACGGTGCTGGC
CCCGAACGAACGAGGCGATGGCGAAGCTTGACGACGGATCAATTGGAGCG
AACCGGGGGGCGCCGGAACAGATTATTTATTACCACATTTATCCCGGAGT
ATCCAAACG
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