CF417227

Overview
NameCF417227
Unique NameCF417227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417227_ssr63 microsatellite CF417227_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417227_ssr538 microsatellite CF417227_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: IAR1_ARATH (IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 113/235 (48.09%), Postives = 137/235 (58.30%), Query Frame = 1
Query:    1 EDMKLYGFGPYYXXXXXXXXXXXXXXXXXQLSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGESNSWXXXXXXXXXXXXXXXXXXXXXXXTQSESSSGTEGIVSNEVSEDSLNGDNLAXHETLLRRRKTTSVDGDYKSD 705
            EDM+L GFGP                    L+G ALW+NALGCSLLVSLASLICLVLLP++F+QGKPSK  VDSLA+FGAGAMLGDAFLHQLPHAF            N  H  H   +       +QDLSVG+SVLAGIV+FL+VEK+VRYVEENS  SN+W                        Q  SS   + IV+   S + ++G +    +  LR+RKT++ D   KSD
Sbjct:   80 EDMRLCGFGP--------CLHDHDHESSSTLTGFALWLNALGCSLLVSLASLICLVLLPIMFVQGKPSKWFVDSLALFGAGAMLGDAFLHQLPHAFGGGHSHSNDHHENHDHHDHSHSDSPSHSHSIQDLSVGLSVLAGIVVFLLVEKLVRYVEENSSGSNTWGHHHHHHHAGSKKLKDEGDHNNLDQQSSS---DAIVN---SSEKVSGGST---DKSLRKRKTSASDATDKSD 297          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: S39A7_PONAB (Zinc transporter SLC39A7 OS=Pongo abelii GN=SLC39A7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   91 LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGESN 483
            L  + LW  ALG ++L+S A    L L+PV     +  ++++  L  F +G +LGDAFLH +PHA             +  H  H G+           LSVG+ VL+GIV FL+VEK VR+V+   G S+
Sbjct:  129 LDAVTLWAYALGATVLISAAPFFVLFLIPVESNSPR-HRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHTLEQPGH-GHS-HSGQGPI--------LSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSH 248          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: S39A7_HUMAN (Zinc transporter SLC39A7 OS=Homo sapiens GN=SLC39A7 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   91 LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGESN 483
            L  + LW  ALG ++L+S A    L L+PV     +  ++++  L  F +G +LGDAFLH +PHA             +  H  H G+           LSVG+ VL+GIV FL+VEK VR+V+   G S+
Sbjct:  129 LDAVTLWAYALGATVLISAAPFFVLFLIPVESNSPR-HRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHTLEQPGH-GHS-HSGQGPI--------LSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSH 248          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: S39A7_MOUSE (Zinc transporter SLC39A7 OS=Mus musculus GN=Slc39a7 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 1
Query:   91 LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQD---LSVGISVLAGIVLFLIVEKIVRYVEENSGESN 483
            L  + LW  ALG ++L+S A    L L+PV     +  ++++  L  F +G +LGDAFLH +PHA              + H  H   +             LSVG+ VL+GIV FL+VEK VR+V+   G S+
Sbjct:  137 LDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPR-HRSLLQILLSFASGGLLGDAFLHLIPHAL-------------EPHSHHAPEQPGHGHSHSGQGPILSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSH 256          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: S39A7_CANFA (Zinc transporter SLC39A7 OS=Canis familiaris GN=SLC39A7 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 48/131 (36.64%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   91 LSGLALWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGESN 483
            L  + LW  ALG ++L+S A    L L+PV     +  ++++  L  F +G +LGDAFLH +PHA             +  H  H G+           LSVG+ VL+GIV FL+VEK VR+V+   G S+
Sbjct:  129 LDTVTLWAYALGATVLISAAPFFVLFLIPVESNSPR-HRSLLQILLSFASGGLLGDAFLHLIPHALEPHSHHPLEQPGH-GHS-HSGQGPI--------LSVGLWVLSGIVAFLVVEKFVRHVKGGHGHSH 248          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: CSUP_DROME (Protein catecholamines up OS=Drosophila melanogaster GN=Catsup PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  106 LWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSG 474
            +W++++G +LL+S A  + L ++P+     +  K  +  L  F +G +LGDAFLH +PHA                H  H   E+        D+S+G+ VL GI+ FL VEK+VR ++   G
Sbjct:  131 IWLHSIGSTLLISAAPFVLLYIIPLD--NSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHDHGHDHHHHHDGEEHEHGHS-HDMSIGLWVLGGIIAFLSVEKLVRILKGGHG 250          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: S39A7_DANRE (Zinc transporter Slc39a7 (Fragment) OS=Danio rerio GN=slc39a7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 46/130 (35.38%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  106 LWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKAVVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQD---LSVGISVLAGIVLFLIVEKIVRYVEENSGESNS 486
            LW+ A+G +LL+S A  + L L+PV     +    ++  L  F +G +LGDAFLH +PHA                 Q H G E             +SVG+ VL GIV FL+VEK VR ++     S+S
Sbjct:  124 LWMQAIGATLLISAAPFLILFLIPVQSNTDQHQN-LLKVLLSFASGGLLGDAFLHLIPHALEPHSHHSQPHSEESHGQSH-GEESHGHSHGAAHGHMMSVGLWVLGGIVAFLVVEKFVRLLKGGHSHSHS 251          
BLAST of CF417227 vs. ExPASy Swiss-Prot
Match: KE4L_CAEEL (Putative Ke4-like protein tag-148 OS=Caenorhabditis elegans GN=tag-148 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 1
Query:  106 LWVNALGCSLLVSLASLICLVLLPVIFIQGKPSKA--VVDSLAVFGAGAMLGDAFLHQLPHAFXXXXXXXXXXXXNKAHQVHVGREQXXXXXXLQDLSVGISVLAGIVLFLIVEKIVRYVEENSGESNS 486
            LWV A+  +LL+S A    L+ +P   IQ   S++  ++  L  FG+G +LGDAFLH +PHA               +H                D+SVG  VL GI+ FL VEK+VR +    G  +S
Sbjct:  157 LWVYAISATLLISAAPCFILMFIP---IQANTSESGPLLKVLLAFGSGGLLGDAFLHLIPHATPAGDGHGHSHSHGHSH------GGGGHSHGAHDMSVGGWVLGGIIAFLTVEKLVRILRGEDGHGHS 276          
The following BLAST results are available for this feature:
BLAST of CF417227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IAR1_ARATH9.750e-4748.09IAA-alanine resistance protein 1 OS=Arabidopsis th... [more]
S39A7_PONAB4.571e-1236.64Zinc transporter SLC39A7 OS=Pongo abelii GN=SLC39A... [more]
S39A7_HUMAN4.571e-1236.64Zinc transporter SLC39A7 OS=Homo sapiens GN=SLC39A... [more]
S39A7_MOUSE5.970e-1235.07Zinc transporter SLC39A7 OS=Mus musculus GN=Slc39a... [more]
S39A7_CANFA7.798e-1236.64Zinc transporter SLC39A7 OS=Canis familiaris GN=SL... [more]
CSUP_DROME1.018e-1132.52Protein catecholamines up OS=Drosophila melanogast... [more]
S39A7_DANRE3.870e-1135.38Zinc transporter Slc39a7 (Fragment) OS=Danio rerio... [more]
KE4L_CAEEL6.601e-1134.88Putative Ke4-like protein tag-148 OS=Caenorhabditi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-157 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417227 ID=CF417227; Name=CF417227; organism=Citrus sinensis; type=EST; length=713bp
GAAGATATGAAATTGTACGGATTTGGCCCTTATTACGGCCATGATCACGA
TCATGGTCATAGTCATCATCATCATGATAGTGATTCGCAGCTTTCGGGTT
TAGCTCTCTGGGTGAATGCATTGGGTTGTTCCCTATTGGTGAGCTTGGCT
TCGCTTATTTGCTTGGTACTTTTGCCGGTGATATTCATTCAAGGGAAGCC
ATCCAAAGCCGTTGTCGACTCATTGGCTGTATTTGGGGCTGGGGCTATGT
TGGGTGATGCTTTTCTTCATCAATTGCCACATGCTTTTGGTGGTGAGCAT
TCCCACTCACATGATCACCATGAGAACAAGGCTCATCAGGTTCATGTTGG
ACGTGAGCAGCATTCGCATTCACATTCTTTACAAGATCTTTCTGTGGGAA
TATCTGTACTGGCTGGAATTGTACTCTTTCTTATTGTAGAGAAAATAGTG
AGATACGTTGAAGAGAACTCGGGGGAATCTAACTCATGGGGCCATGGTCA
TCACCACCACCATCTTAAGAGTAGTAAGAAATTGAAGGATGATGATGATC
TTGGAAAAACACAATCAGAATCTTCCAGTGGAACTGAAGGAATCGTTTCA
AATGAGGTGTCAGAAGACTCTTTGAATGGGGATAATCTTGCTCNACATGA
AACTCTTCTTCGGAGGAGGAAGACGACTTCTGTTGATGGAGATTATAAAT
CAGATGTAGATGC
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