CF417228

Overview
NameCF417228
Unique NameCF417228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417228 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.246e-17
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 2
Query:   20 IKELFNAYAICSTMVDQXXXXXXXXXXXXXNDSRDKLKGFDKFLHETSQ-SQNAASDLDKYLEEPIFPRNCEFNILNWWKVHTPRYPILSMMARDVLGTPMSTVVPESPFSTG 355
            I++L+  Y+ CS    +              ++ D    F  +LHE     Q  +++LDKY+ EP+   + +F+IL+WW+     YPIL+ +ARDVL   +STV  ES FS G
Sbjct:  584 IRKLYQFYSSCSPSAPKTKTTTNDSMDDTLMENEDD--EFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAG 694          

HSP 2 Score: 33.113 bits (74), Expect = 4.246e-17
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  354 GGRLLDSCQSSLNPDTRQALICARDWVA 437
            GGR++D  ++ L  +  +ALIC +DWVA
Sbjct:  694 GGRVVDPYRNRLGSEIVEALICTKDWVA 721          
BLAST of CF417228 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.249e-17
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 2
Query:   20 IKELFNAYAICSTMVDQXXXXXXXXXXXXXNDSRDKLKGFDKFLHETSQ-SQNAASDLDKYLEEPIFPRNCEFNILNWWKVHTPRYPILSMMARDVLGTPMSTVVPESPFSTG 355
            I++L+  Y+ CS    +              ++ D    F  +LHE     Q  +++LDKY+ EP+   + +F+IL+WW+     YPIL+ +ARDVL   +STV  ES FS G
Sbjct:  615 IRKLYQFYSSCSPSAPKTKTTTNDSMDDTLMENEDD--EFQNYLHELKDYDQVESNELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAG 725          

HSP 2 Score: 33.113 bits (74), Expect = 4.249e-17
Identity = 13/28 (46.43%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  354 GGRLLDSCQSSLNPDTRQALICARDWVA 437
            GGR++D  ++ L  +  +ALIC +DWVA
Sbjct:  725 GGRVVDPYRNRLGSEIVEALICTKDWVA 752          
The following BLAST results are available for this feature:
BLAST of CF417228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE4.246e-1734.51Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE4.249e-1734.51Putative AC transposase OS=Zea mays PE=2 SV=2[more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-158 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H5 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417228 ID=CF417228; Name=CF417228; organism=Citrus sinensis; type=EST; length=727bp
CAAGGAAGTTTCTGATGGTATTAAGGAACTTTTCAATGCATATGCTATCT
GCTCAACCATGGTGGATCAAGGTTCTGCTTTGCCAGGAAGTAGCTTACCA
AGCGCTAGTAATGATAGTAGAGATAAATTAAAGGGCTTCGACAAATTCCT
CCATGAGACTTCTCAGAGTCAAAATGCAGCTTCAGACTTGGACAAGTATT
TAGAGGAACCGATCTTTCCTCGTAATTGTGAGTTCAACATATTAAATTGG
TGGAAAGTACACACACCGAGGTACCCTATATTGTCCATGATGGCTCGTGA
TGTTCTGGGAACTCCCATGTCAACTGTTGTTCCAGAATCACCATTTAGCA
CTGGGAGGTAGATTGCTTGATAGCTGTCAAAGTTCACTGAATCCTGATAC
TCGACAAGCCTTGATATGTGCACGAGACTGGGTTGCGGATTGAATCTACT
GATGAGCTTAATCCTTCCTCGAATCACTATTCTCTGCCCCTTTACATTGA
AGCAAATTAAGCTGAGNAATGGTTCATGGATCTGCCATCAGTTCATAAGA
TGGTGTCCAATGCTTTTCCAACACTTGGGCCTCACTCTCAGAATCTGCTG
CAGATTTAATTTAGTTTGTTAGATGTACTGNCATGTTTTAGTTCTGCATT
GCCATGAATCAGTAGCGAGGCAAGAGTTGCTGACTGCTTAAAGCTCTTCT
ACAAGAAACTTAAAATGTACATCTGGT
back to top