CF417229 | Citrus Genome Database

Overview


Name	CF417229
Unique Name	CF417229
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13137	contig	Csv1_Contig13137:74..680.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-40
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 2

Query:   80 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            ST+F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    2 STVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 68.9366 bits (167), Expect = 1.404e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 1.404e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-40
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 2

Query:   80 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            ST+F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    2 STVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 68.9366 bits (167), Expect = 1.404e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 1.404e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-40
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 2

Query:   74 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            M+S+ FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    1 MASSGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 67

HSP 2 Score: 68.9366 bits (167), Expect = 1.404e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   59 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 115

HSP 3 Score: 46.2098 bits (108), Expect = 1.404e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  114 IGIVGDAGVRANAQQPKLFVGM 135

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.826e-40
Identity = 51/67 (76.12%), Postives = 51/67 (76.12%), Query Frame = 2

Query:   74 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            MSST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    1 MSST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 68.9366 bits (167), Expect = 1.826e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 1.826e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.826e-40
Identity = 51/67 (76.12%), Postives = 51/67 (76.12%), Query Frame = 2

Query:   74 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            MSST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    1 MSST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 68.9366 bits (167), Expect = 1.826e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 1.826e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.012e-40
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2

Query:   74 MSSTLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            M+ST FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    1 MAST-FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 68.9366 bits (167), Expect = 4.012e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 4.012e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.782e-40
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 2

Query:   80 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            S++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 67.0106 bits (162), Expect = 6.782e-40
Identity = 35/57 (61.40%), Postives = 37/57 (64.91%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 6.782e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.782e-40
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 2

Query:   80 STLFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            S++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66

HSP 2 Score: 67.0106 bits (162), Expect = 6.782e-40
Identity = 35/57 (61.40%), Postives = 37/57 (64.91%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIG
Sbjct:   58 PVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIG 114

HSP 3 Score: 46.2098 bits (108), Expect = 6.782e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  113 IGIVGDAGVRANAQQPKLFVGM 134

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.826e-40
Identity = 47/62 (75.81%), Postives = 47/62 (75.81%), Query Frame = 2

Query:   89 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    4 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65

HSP 2 Score: 68.9366 bits (167), Expect = 8.826e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   57 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 113

HSP 3 Score: 46.2098 bits (108), Expect = 8.826e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  112 IGIVGDAGVRANAQQPKLFVGM 133

[Close]

BLAST of CF417229 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.826e-40
Identity = 47/62 (75.81%), Postives = 47/62 (75.81%), Query Frame = 2

Query:   89 FSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGSFG 274
            FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAG  G
Sbjct:    4 FSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 65

HSP 2 Score: 68.9366 bits (167), Expect = 8.826e-40
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  249 PLLWRGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIG 419
            P++  GVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG
Sbjct:   57 PVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIG 113

HSP 3 Score: 46.2098 bits (108), Expect = 8.826e-40
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query:  415 LGIVGDAGVRANAQQPKLFVGM 480
            +GIVGDAGVRANAQQPKLFVGM
Sbjct:  112 IGIVGDAGVRANAQQPKLFVGM 133

The following BLAST results are available for this feature:

BLAST of CF417229 vs. ExPASy Swiss-Prot

BLAST of CF417229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31


Match Name	E-value	Identity	Description
VATL_MESCR	1.404e-40	73.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_BETVU	1.404e-40	73.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL4_ARATH	1.404e-40	73.13	V-type proton ATPase 16 kDa proteolipid subunit c4...	[more]
VATL_KALDA	1.826e-40	76.12	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_GOSHI	1.826e-40	76.12	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL2_ARATH	4.012e-40	74.63	V-type proton ATPase 16 kDa proteolipid subunit c2...	[more]
VATL_ORYSJ	6.782e-40	73.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_ORYSI	6.782e-40	73.85	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL_PHAAU	8.826e-40	75.81	V-type proton ATPase 16 kDa proteolipid subunit OS...	[more]
VATL1_ARATH	8.826e-40	75.81	V-type proton ATPase 16 kDa proteolipid subunit c1...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-159 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H6 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417229 ID=CF417229; Name=CF417229; organism=Citrus sinensis; type=EST; length=609bp
GAGAAAGAGCACGGAACAAATAACGAAAACAAAACACACGCTCAAGTCTC
AGATCCAGTCCGCATCTCCCAAGATGTCTTCAACATTATTCAGTGGCGAT
GAAACCGCTCCATTCTTCGGCTTTCTCGGCGCCGCTGCCGCCCTAGTCTT
TTCCTGTATGGGAGCTGCGTACGGAACGGCGAAGAGTGGCGTCGGTGTGG
CGTCGATGGGAGTGATGAGGCCGGAGCTTGTGATGAAATCGATCGTGCCC
GTTGTTATGGCGGGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTA
TTATTAGTACCGGAATTAACCCTAAGGCCAAATCTTATTACCTTTTCGAT
GGCTACGCGCATCTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTC
CGCTGGTATGGCAATTGGGGATCGTCGGTGATGCTGGTGTCAGAGCTAAT
GCTCAACAGCCGAAGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGC
CGAAGCGCTGGCACTTTATGGACTTATTGNTGGTATCATTCTTTCTTCTC
GTGCTGGTCAGTCAAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTT
ATTTGGCCT