CF417230

Overview
NameCF417230
Unique NameCF417230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417230 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 2
Query:   14 SASIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQX*RC*EAHLLIHKLYGNNQG---XAXKLGYETEAFADI*CXWVMSSRLYXTLCVGNALG 547
            +++I    TR L + PR S  + +   +LS  F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGMS VPSVTELILAEFLYLQ     E       LY N+ G      KLGY+TEAFA       +   ++ TLCVGNA G
Sbjct:   18 TSAIIPSSTRNLRSKPRFSSSS-SLRASLSNGFLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQY----EDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIF-TLCVGNAWG 192          
The following BLAST results are available for this feature:
BLAST of CF417230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CLPR4_ARATH1.139e-3852.49ATP-dependent Clp protease proteolytic subunit-rel... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-160 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H7 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417230 ID=CF417230; Name=CF417230; organism=Citrus sinensis; type=EST; length=585bp
AGTCGCCACCGCATCAGCGTCGATCTTCGGGCTCCGCACGCGCATGTTAG
CAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCTA
TCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACTT
CTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGCA
AGTCCAAACCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAGT
GGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACAA
GAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAGC
TGATTCTTGCTGAGTTCCTTTACCTGCAGNTATGAAGATGTTGAGAAGCC
CATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTNGGCGAGNAA
GTTGGGTTATGAAACTGAGGCTTTTGCGGATATATGATGTTNATGGGTTA
TGTCAAGCCGCCTATATTTNACTCTTTGTGTCGGCAATGCTTTGGGGTGA
GGCAGCGCTTCTCTTNGGGTGCCGGTGCCAAAGGA
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