CF417232

Overview
NameCF417232
Unique NameCF417232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13683 contig Csv1_Contig13683:109..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG--PNAERIQKG 228
            D L  +F+KYG+V D++IPRDR T +SRGFAFVR+    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G
Sbjct:   28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRG 104
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: RSP4_CAEEL (Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG-PNAERIQKG 228
            +DL   F++YG + D+ IPRD+ +  S+GF FVR+    +A+ A+DR DG++VDGRE+ V  AKY  P+ ER  +G
Sbjct:   33 NDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGRG 108
[Close]
BLAST of CF417232 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    4 DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 201
            D L  +F+KYG+V D++IPR+  T   RGFAFVR+    +AQ A   +DG  +DGRE+ VQ A+YG
Sbjct:   28 DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93
The following BLAST results are available for this feature:
BLAST of CF417232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SFRS2_RAT3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN3.176e-1550.65Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]
RSP4_CAEEL5.606e-1246.05Probable splicing factor, arginine/serine-rich 4 O... [more]
SFR2B_HUMAN3.633e-1150.00Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-162 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417232 ID=CF417232; Name=CF417232; organism=Citrus sinensis; type=EST; length=685bp
GCTGATGATCTGTTTCCGCTTTTTGACAAGTACGGCAAGGTCGTCGATAT
TTTCATACCTAGAGATCGAAGGACGGGGGACTCCCGTGGTTTTGCTTTTG
TGCGGTACAAATATGCTGATGAGGCGCAAAAGGCTGTTGATAGACTGGAT
GGACGAGTTGTTGATGGTCGTGAAATAACAGTTCAGTTTGCAAAATATGG
TCCAAATGCCGAGAGGATTCAGAAAGGAAGGATTATTGAATCATTCCCAA
GATCGAAGCACAGGTCAAGGAGTCGCAGTCCTCGGAGAAGATACAGAGAT
GATTACAGAGATAGAGATTATCGAAGGAGGAGTCACAGTAGAAGCTGGGA
TAGGTACGAACGTGACAGATACCCGTGGGAGGGGATAGAGATTTACCGTC
GACGAAGTAGAAGCAGAAGTGCCAGTCCTGATTTACTCCAGAGGCCGTGG
CAGAGGCAGATATGATGATTATCGCCGGAGTCCTAGTCGATCNGGTTGGC
AGTGCCTCCCCCAGCTCAGCATAGCCCAGTCCCCGGCAGGAGTCTTTCCC
CTCGCAAGAATTCTCCTCTTANGGGTGAGAGTTCTGATGGACGCAGTCGN
GGGTGAGCGGTCTCCNNCTCCTCGAAGTGCTTNCCCCCCGAGGGGGGACA
TGGGTGATACCCCGCAGCTATTCCCCCGGGAAATT
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