CF417235

Overview
NameCF417235
Unique NameCF417235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417235 vs. ExPASy Swiss-Prot
Match: RNZN_ARATH (Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.048e-49
Identity = 87/118 (73.73%), Postives = 103/118 (87.29%), Query Frame = 1
Query:  283 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEIHRRMDHSELNHTLVGLDVGGKVLHEK 636
            + MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLPMYVATRGLY+MKPPTIIVP+ IKE VE LFE+HR++D SEL H LVGLD+G + +  K
Sbjct:    5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLPMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRK 122          

HSP 2 Score: 25.409 bits (54), Expect = 2.048e-49
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  614 GEKFCMRKDLFVKAF 658
            GE+F +RKDL VKAF
Sbjct:  115 GEEFIIRKDLKVKAF 129          
BLAST of CF417235 vs. ExPASy Swiss-Prot
Match: RNZN_WHEAT (Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 79/109 (72.48%), Postives = 98/109 (89.91%), Query Frame = 1
Query:  289 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEIHRRMDHSELNHTLVGLDVG 615
            ++++GY VEG+SI GHETC+IFP+L LAFDIGRCP RA++Q+FLFISHAH+DHIGGLPMYVATRGLYR++PPTI VP  ++E VE+LF++HR MD SELNHTLV LD+G
Sbjct:    7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMYVATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIG 115          
BLAST of CF417235 vs. ExPASy Swiss-Prot
Match: RNZC_ARATH (Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  283 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEIHRRMDHSELNHTLVGLDVG 615
            +G++L+ Y +EG+S+ GHETC+I P L   FDIGRCPSRA+ Q FLFI+HAH+DHIGGLPMYVA+RGLY ++PP I VP  IKEDVE+L EIHR M   ELN  L+ L VG
Sbjct:   74 KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVG 184          
The following BLAST results are available for this feature:
BLAST of CF417235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RNZN_ARATH2.048e-4973.73Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=... [more]
RNZN_WHEAT7.972e-4572.48Nuclear ribonuclease Z (Fragment) OS=Triticum aest... [more]
RNZC_ARATH4.237e-3863.96Ribonuclease Z, chloroplastic OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-165 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417235 ID=CF417235; Name=CF417235; organism=Citrus sinensis; type=EST; length=660bp
GTCAAAACACAATAGTAAAAATGCTGTGTCGTCTCCTAGTGTTCAAGGGT
AAATTACTTTCATATTTATATATTTCCTTTGTTATGATATTAACTGAAAA
AAATCACACGAAAAGTCCAATACATAAATAAAATCGAACTCGACTGGAAA
TGAAGTACATCAGCGTAAAGCTTTTGTTCCGATTTTGAATCGAGATTGGC
ATATACCCATTGATGATTGATTGCTCTGCAGCCGTTGAACTACAGAATGG
CCACGAAAGCCAAAGAAGAGGAGAAGAGCGGGAGGGGGATGCAATTACAA
GGGTACAAAGTAGAAGGATTGTCGATAGCAGGCCACGAGACTTGCATTAT
TTTCCCCTCTCTCGATTTAGCATTCGATATTGGACGATGCCCTTCTCGAG
CTCTCTCTCAAAATTTCCTCTTTATCTCCCACGCCCACATGGATCACATT
GGAGGATTGCCCATGTATGTCGCTACCAGAGGCCTGTACCGCATGAAGCC
CCCCACAATTATTGTTCCCTCTTGTATTAAAGAAGATGTGGAACAACTCT
TTGAGATTCATAGAAGGATGGATCATTCTGAGCTGAACCATACACTGGTT
GGCTTGGATGTGGGGGGAAAAGTTTTGCATGAGAAAGGACCTTTTTGTAA
AAGCCTTCAA
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