CF417236

Overview
NameCF417236
Unique NameCF417236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417236 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 65/198 (32.83%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   27 AGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKI-PYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDI-SGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLIL 614
            AG+ G GR   SLPSQL + KFSYC+       +   SNL+L +   S  + +P  +           SS    FYY+ L  + VGS  + I P ++ +  ++G GG+I+DSG+T T+     +++V +EFI Q+   +        SG   CF   S   ++ +P  ++ F GG  + LP ENYF    N ++CL +
Sbjct:  216 AGLVGMGRGPLSLPSQLDVTKFSYCMTPI---GSSTPSNLLLGSLANSVTAGSPNTTLI--------QSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI---NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNGLICLAM 398          
BLAST of CF417236 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 65/204 (31.86%), Postives = 98/204 (48.04%), Query Frame = 3
Query:   27 AGIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCF-DISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAG 635
            AG+ G G    SLPSQLG+ +FSYC+ S     +   S L L +        +P  +      NP         +YY+ L+ I VG  ++ IP S      DG GG+I+DSG+T T++    + AVA+ F  Q+   +     E  SGL  CF   S   +V +PE+ ++F GG  + L  +N        V+CL + + +  G
Sbjct:  217 AGLIGMGWGPLSLPSQLGVGQFSYCMTSY---GSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPT--------YYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQI---NLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEGVICLAMGSSSQLG 405          
The following BLAST results are available for this feature:
BLAST of CF417236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR7.050e-2032.83Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR8.618e-1831.86Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-166 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417236 ID=CF417236; Name=CF417236; organism=Citrus sinensis; type=EST; length=676bp
GCTCCATTTTATCCGACAGGCAACCCGCCGGCATTGCCGGGTTCGGTCGT
AGCTCCGAATCGTTGCCCTCCCAACTGGGTCTCAAGAAATTCTCTTACTG
TTTACTTTCCCGAAAATTCGACGACGCGCCGGTCAGTAGTAATCTTGTCT
TGGACACCGGGCCGGGTTCGGGTGATTCGAAAACTCCGGGTCTTAGCTAC
ACTCCGTTTTATAAGAACCCGGTCGGATCAAGTTCTGCGTTTGGGGAATT
CTATTATGTCGGTTTACGTCAAATTATAGTTGGGAGTAAACACGTGAAGA
TTCCGTACAGTTATTTGGTACCCGGATCCGATGGAAACGGAGGGGTCATC
GTGGATTCGGGTTCCACGTTTACTTTCATGGAAGGGCCCCTTTTTGAAGC
TGTGGCAAAAGAGTTTATAAGACAGATGGGTAATTATAGCAGAGCTGCTG
ACGTGGAGAAAAAGTCCGGCTTAAGGCCGTGTTTCGATATCTCGGGCAAA
AAATCGGTTTACCTACCGGAATTGATTTTGAAATTTAAAGGTGGTGCCAA
AATGGCATTGCCCCCGGAGAATTATTTTGCGCTTGTGGGTAATGAGGTGC
TCTGCTTAATACTCTTTACCGATAATGCGGCGGGCCCGGCGCTCGGCCGT
GGTCCGGCGATTATTTTGGGGGATTC
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