CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:178..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.204e-49
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = -3
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            PMAAPKVRF+TKIYHPN+DKL RI LDI KDKWSPALQIRTVLLSIQALL+APNPDDPL+ ++ + WKTNEA+A+ETA+ WTRLYA
Sbjct:   64 PMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          

HSP 2 Score: 66.6254 bits (161), Expect = 1.204e-49
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPK 69          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.180e-45
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = -3
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            PM  P VRFLTKIYHPN+DKLGRICL   K  WSPALQIRTVLLSIQAL+ APNPDDPL  ++AK WK NE +A+  A+EWT+ YA
Sbjct:   62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          

HSP 2 Score: 68.9366 bits (167), Expect = 2.180e-45
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = -2
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            + L  +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EY
Sbjct:   12 ETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.779e-45
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = -3
Query:  263 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 547
            F  +  PMAAPKVRFLTKIYHPNIDKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAVETAKEWTRLYASGA
Sbjct:   59 FLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 153          

HSP 2 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLLSEPAPGISASPSE+NMRYFNVMILGPTQSPYEGGVFKLELFLPEEY     K
Sbjct:   15 QRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.419e-45
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = -3
Query:  263 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 547
            F  +  PMAAPKVRFLTKIYHPNIDKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAV+TAKEWTRLYASGA
Sbjct:   59 FLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASGA 153          

HSP 2 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 51/56 (91.07%), Postives = 51/56 (91.07%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY     K
Sbjct:   15 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPK 70          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.065e-39
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = -3
Query:  272 GCSNWNYFCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 568
            G  N   F   + PM+APKVRFLTKIYHPNIDKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+HWKTNE EA+  A+EWTRLYA
Sbjct:   50 GVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          

HSP 2 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRL++EPAPGISA+P+ DN RYF V I GP  SP+EGGVF LELFL ++Y     K
Sbjct:   13 QRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPK 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  272 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 547
            F  +  PMAAPKVRF+TKIYHPN+DKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          

HSP 2 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  272 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 547
            F  +  PMAAPKVRF+TKIYHPN+DKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          

HSP 2 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  272 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 547
            F  +  PMAAPKVRF+TKIYHPN+DKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          

HSP 2 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  272 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 547
            F  +  PMAAPKVRF+TKIYHPN+DKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:   57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          

HSP 2 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.178e-38
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  272 FCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 547
            F  +  PMAAPKVRF+TKIYHPN+DKLGRICLDI KDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WK+NEA+A+ETA+ WTRLYA
Sbjct:   57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          

HSP 2 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = -2
Query:  513 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNGCSK 680
            QRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEY     K
Sbjct:   13 QRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 68          
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UE2NL_HUMAN1.204e-4980.23Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC13_SCHPO2.180e-4570.93Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC36_ARATH3.779e-4592.63Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH8.419e-4591.58Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DICDI1.065e-3977.78Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_PONAB4.047e-3980.43Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE4.047e-3980.43Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN4.047e-3980.43Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN4.047e-3980.43Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT1.178e-3879.35Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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