CF417262

Overview
NameCF417262
Unique NameCF417262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7804 contig Csv1_Contig7804:388..1068. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 439.499 bits (1129), Expect = 7.700e-123
Identity = 213/226 (94.25%), Postives = 221/226 (97.79%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGNPRLNLASFVTTWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLE++ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP +AV+MVDENTICVAAILGSTLNGEFEDVKLLNDLL EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSG K
Sbjct:   52 LDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHK 277          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 4.991e-122
Identity = 213/226 (94.25%), Postives = 217/226 (96.02%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGNPRLNLASFVTTWMEPECDKLMM +INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLED ETAVGVGTVGSSEAIMLAGLAFKRKWQNK KA+GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP KAVEMVDENTICVAAILGSTLNGEFEDVK LNDLL EKNKETGWDTPIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSG K
Sbjct:   52 LDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHK 277          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 434.876 bits (1117), Expect = 1.896e-121
Identity = 211/226 (93.36%), Postives = 219/226 (96.90%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLE+SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP+DKPNIVTGANVQVCWEKFARYFEVELKEV LSEGYYVMDP KA EMVDENTICVAAILGSTLNGEFEDVK LNDLL +KN+ETGW+TPIHVDAASGGFIAPF+YPELEWDFRLPLVKSINVSG K
Sbjct:   51 LDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVKKNEETGWNTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 423.705 bits (1088), Expect = 4.372e-118
Identity = 203/226 (89.82%), Postives = 218/226 (96.46%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGNPRLNLASFV+TWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN++A LF+AP+ D ETAVGVGTVGSSEAIMLAGLAFKRKWQ+KRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL EGYYVMDP KAVE+VDENTICVAAILGSTL GEFEDVKLLN+LL +KNKETGW+TPIHVDAASGGFIAPFL+P+LEWDFRLPLVKSINVSG K
Sbjct:   53 LDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWETPIHVDAASGGFIAPFLWPDLEWDFRLPLVKSINVSGHK 278          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.277e-66
Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN + NLA+F  T ++ E   LM   I+KN +D DEYP T E+++RCV+I+A L+N+P E SET +G  T GSSEA ML G+A K +W+  RK +GKPFDKPNIVTG  VQ+CW KFA YF++EL+EV +    Y+M P +A++  DENTI V   LG T   ++EDVK +++ L +  KETG D PIHVDAASGGF+APFL PE+ WDFRLP VKSIN SG K
Sbjct:   52 LDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP-ESSET-IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHK 274          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 117/226 (51.77%), Postives = 156/226 (69.03%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN + NLA+F  T ++     +M   I+KN +D DEYP + E++NRC++I+A L+NAP  DS   +G  T GSSEA ML GLA K  W+  RK  G P+DKPNIVTG  VQ+CW KFA YF++E++E+ +  G YVM+  + ++ VDENTI V   LG T   ++EDV  +++ L +  KE+G + PIHVDAASGGF+APF+  E+ WDFRLP VKSIN SG K
Sbjct:   50 LDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGFVAPFIQQEIIWDFRLPRVKSINASGHK 272          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
BLAST of CF417262 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.762e-61
Identity = 114/226 (50.44%), Postives = 154/226 (68.14%), Query Frame = 2
Query:    2 LDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGPK 679
            LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SG K
Sbjct:   52 LDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK 276          
The following BLAST results are available for this feature:
BLAST of CF417262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCE1_ARATH7.700e-12394.25Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_PETHY4.991e-12294.25Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH1.896e-12193.36Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC4.372e-11889.82Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
GADA_DICDI2.277e-6656.64Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI3.762e-6151.77Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEB_SHIFL3.762e-6150.44Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI3.762e-6150.44Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO573.762e-6150.44Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL3.762e-6150.44Glutamate decarboxylase alpha OS=Shigella flexneri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-192 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417262 ID=CF417262; Name=CF417262; organism=Citrus sinensis; type=EST; length=681bp
GCTCGACGGGAATCCAAGATTGAACTTGGCTTCCTTCGTCACAACGTGGA
TGGAGCCTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTAC
GTTGACATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGT
GAACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGG
CTGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGC
CTTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCC
CTTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGG
AGAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAGTGAAGCTGTCG
GAAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAAATGGTGGATGA
AAACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTTAATGGAGAAT
TTGAAGATGTCAAGCTCTTGAACGACCTTTTGGCAGAGAAGAACAAGGAA
ACAGGATGGGATACTCCAATTCATGTTGATGCTGCAAGTGGTGGCTTCAT
TGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTGCCGCTGG
TGAAGAGTATTAATGTTAGTGGCCCCAAGTA
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