CF417263

Overview
NameCF417263
Unique NameCF417263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:457..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 4.701e-94
Identity = 168/199 (84.42%), Postives = 178/199 (89.45%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVL GF   ++ +      LGEGLDP+YPGG F P
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGF---VEGYRVGGGPLGEGLDPIYPGGAFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 2.852e-91
Identity = 166/199 (83.42%), Postives = 174/199 (87.44%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVL GF   ++ +      LGEGLD +YPGG F P
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGF---VEGYRVGGGPLGEGLDKIYPGGAFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 4.865e-91
Identity = 165/199 (82.91%), Postives = 175/199 (87.94%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILA+WA QVVL G    I+ +      LGEGLD +YPGG F P
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGL---IEGYRVGGGPLGEGLDKIYPGGAFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.414e-90
Identity = 162/199 (81.41%), Postives = 175/199 (87.94%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVL G    ++ +      LGEGLD LYPGG F P
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMG---AVEGYRVGGGPLGEGLDQLYPGGAFDP 195          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.118e-90
Identity = 163/199 (81.91%), Postives = 172/199 (86.43%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEGGLDYLGNPNL+HAQSILAIWACQVVL GF   ++ +      LGEGLD +YPGG F P
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGF---VEGYRVGGGPLGEGLDKIYPGGAFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 9.175e-90
Identity = 164/199 (82.41%), Postives = 176/199 (88.44%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL G    I+ +      LGEGLDPLYPGG F P
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGL---IEGYRVGGGPLGEGLDPLYPGGAFDP 195          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 9.175e-90
Identity = 162/199 (81.41%), Postives = 172/199 (86.43%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EGGLDYLGNPNLIHAQSILAIWA QVVL GF   ++ +      LGEGLDPLYPGG F P
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGF---VEGYRVGGGPLGEGLDPLYPGGAFDP 196          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.210e-85
Identity = 161/201 (80.10%), Postives = 171/201 (85.07%), Query Frame = 2
Query:   17 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MAT SAIQ S+ AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNG+KFGEAVWFKAGAQIFSEGGLDY GNPNLIHAQSILAIWACQVVL G    I+ +      LGEGLDPL PGG F P
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGL---IEGYRVGGGTLGEGLDPLLPGGAFDP 197          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.161e-84
Identity = 160/199 (80.40%), Postives = 172/199 (86.43%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GF   ++ +      LGEGLD +YPGG F P
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF---VEGYRVGGGPLGEGLDKVYPGGAFDP 194          
BLAST of CF417263 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.161e-84
Identity = 160/199 (80.40%), Postives = 172/199 (86.43%), Query Frame = 2
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLXGFC*RIQNW--WAVLLGEGLDPLYPGGCF*P 607
            MA SA+ Q+     TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVL GF   ++ +      LGEGLD +YPGG F P
Sbjct:    1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF---VEGYRVGGGPLGEGLDKVYPGGAFDP 194          
The following BLAST results are available for this feature:
BLAST of CF417263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_GOSHI4.701e-9484.42Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP2.852e-9183.42Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC4.865e-9182.91Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SILPR2.414e-9081.41Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB24_SOLLC4.118e-9081.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI9.175e-9082.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA9.175e-9081.41Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_PINTH5.210e-8580.10Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ1.161e-8480.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.161e-8480.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-193 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417263 ID=CF417263; Name=CF417263; organism=Citrus sinensis; type=EST; length=615bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCC
CCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCT
CTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGC
TGGGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCG
TGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCT
GCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCA
GTTTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTA
TCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGG
CCTGCCAGGTTGTGCTTNATGGGTTTTGTTGAAGGATACAGAATTGGTGG
GCGGTCCTCTTGGGTGAAGGACTTGACCCACTTTACCCTGGGGGGTGCTT
TTGACCCACTTGGGT
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