CF417265

Overview
NameCF417265
Unique NameCF417265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417265 vs. ExPASy Swiss-Prot
Match: ISOA3_ARATH (Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQVNCFMI 285
            SGSSDLY+VN+RKPYH +NF+IAHDGFTL DLVSYN+KH                SWNCGFEGET DA IK+LR+RQMKNFHLALM+SQ    M+
Sbjct:  514 SGSSDLYQVNQRKPYHGVNFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGCNDNHSWNCGFEGETGDAHIKSLRTRQMKNFHLALMISQGTPMML 608          

HSP 2 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  615 VIQTGXPMMLMGDEYGHTRYGNNNSYGHDTAINNF 719
            +I  G PMMLMGDEYGHTRYGNNNSYGHDT++NNF
Sbjct:  599 MISQGTPMMLMGDEYGHTRYGNNNSYGHDTSLNNF 633          
BLAST of CF417265 vs. ExPASy Swiss-Prot
Match: GLGX_MYCTU (Glycogen operon protein glgX homolog OS=Mycobacterium tuberculosis GN=glgX PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 50/89 (56.18%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ 267
            +GSSDLY    R+P  SINF+ AHDGFTL DLVSYN KH                SWNCG EG TDD  I ALR+RQM+N    LMVSQ
Sbjct:  446 TGSSDLYEATGRRPSASINFVTAHDGFTLNDLVSYNDKHNEANGENNRDGESYNRSWNCGVEGPTDDPDILALRARQMRNMWATLMVSQ 534          
BLAST of CF417265 vs. ExPASy Swiss-Prot
Match: GLGX_MYCBO (Glycogen operon protein glgX homolog OS=Mycobacterium bovis GN=glgX PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 50/89 (56.18%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ 267
            +GSSDLY    R+P  SINF+ AHDGFTL DLVSYN KH                SWNCG EG TDD  I ALR+RQM+N    LMVSQ
Sbjct:  446 TGSSDLYEATGRRPSASINFVTAHDGFTLNDLVSYNDKHNEANGENNRDGESYNRSWNCGVEGPTDDPDILALRARQMRNMWATLMVSQ 534          
BLAST of CF417265 vs. ExPASy Swiss-Prot
Match: ISOA1_ARATH (Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 GSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ 267
            GS +LY+   RKP+HSINFI AHDGFTL DLV+YN K+               +SWNCG EG+    S+K LR RQM+NF ++LMVSQ
Sbjct:  516 GSPNLYQ-GGRKPWHSINFICAHDGFTLADLVTYNNKNNLANGEENNDGENHNYSWNCGEEGDFASISVKRLRKRQMRNFFVSLMVSQ 602          
BLAST of CF417265 vs. ExPASy Swiss-Prot
Match: GLGX_HAEIN (Glycogen operon protein glgX homolog OS=Haemophilus influenzae GN=glgX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDAS 207
            +GSSDL++ N R P+ ++NFI AHDGFTL DLVSYN KH               +S+N G EG T+  S
Sbjct:  417 AGSSDLFKKNDRLPHTTLNFITAHDGFTLKDLVSYNQKHNETNGEENRDGRNENYSYNHGVEGSTESLS 485          
The following BLAST results are available for this feature:
BLAST of CF417265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ISOA3_ARATH3.813e-3065.26Isoamylase 3, chloroplastic OS=Arabidopsis thalian... [more]
GLGX_MYCTU7.969e-2056.18Glycogen operon protein glgX homolog OS=Mycobacter... [more]
GLGX_MYCBO7.969e-2056.18Glycogen operon protein glgX homolog OS=Mycobacter... [more]
ISOA1_ARATH2.564e-1853.41Isoamylase 1, chloroplastic OS=Arabidopsis thalian... [more]
GLGX_HAEIN6.762e-1147.83Glycogen operon protein glgX homolog OS=Haemophilu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-195 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417265 ID=CF417265; Name=CF417265; organism=Citrus sinensis; type=EST; length=720bp
TCTGGATCTTCCGACCTTTACAGAGTTAATAAGCGGAAGCCTTATCATAG
TATTAATTTTATAATTGCACATGATGGGTTCACACTGTACGATCTGGTTT
CATACAATTACAAGCACAATGAGGCTAATGGAGAAGGAGGGAATGATGGG
TGCAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGGAGAAACAGATGA
TGCCAGTATTAAAGCATTGCGTTCCCGGCAAATGAAAAACTTCCATCTAG
CATTAATGGTATCTCAGGTAAACTGTTTTATGATAGCACGTTGCAACCAA
ATCTTTGTTTTACCTGCTAGTGCGCACAGAATGAGATTGAGACTGTTTAC
TTCAGAAGCAGTTGCACTTCTTATTTTCACTTTTAACTTTGTGGTTCCAC
TGACTATTTTAAGTTCGGAAATCTCATTTTTCATCTTTTGCACGTTACAG
ACTTTGTCGTATTTCTTCCTTTTTCCAACATATGATCAGTATGTTTCAAA
AGCTCCTAATTCTGTTTCTGACCAAATACAACTGTTATAGCCTTATCAGT
CATAAGATTTGAATTGTTTGCTTTATACTACTTATGAAACTTCTGGCAAT
GTTAATTCTTTCAAGTGATACAAACAGGGANCCCAATGATGCTAATGGGA
GATGAATACGGACATACTCGATATGGAAATAACAACAGTTATGGACATGA
TACGGCTATTAACAATTTCC
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