CF417268

Overview
NameCF417268
Unique NameCF417268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1636 contig Csv1_Contig1636:56..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_BOVIN (Transmembrane protein 93 OS=Bos taurus GN=TMEM93 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  175 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:   19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_MOUSE (Transmembrane protein 93 OS=Mus musculus GN=Tmem93 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  175 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:   19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_HUMAN (Transmembrane protein 93 OS=Homo sapiens GN=TMEM93 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  175 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:   19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_DANRE (Transmembrane protein 93 OS=Danio rerio GN=tmem93 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  112 SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            SVA K+        Q  +  +++ N  V+ Y RT +S + G  AGILG TGL GFVFYFL   + S+ L+ KA    +  F S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:    3 SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFLASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_XENTR (Transmembrane protein 93 OS=Xenopus tropicalis GN=tmem93 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  154 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+    + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:   12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYFKSRKPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_XENLA (Transmembrane protein 93 OS=Xenopus laevis GN=tmem93 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  154 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+    + YF S   +   G +GGL ++VLFWTF Y +VH++
Sbjct:   12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYFKSRKPLFTGGLVGGLFTYVLFWTFLYGMVHVY 110          
BLAST of CF417268 vs. ExPASy Swiss-Prot
Match: TMM93_DICDI (Transmembrane protein 93 homolog OS=Dictyostelium discoideum GN=tmem93 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  160 FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTFAYDIVHIF 450
            +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I          K   ++H YF +   I  D    GLM ++LFWTF Y+I+HI+
Sbjct:   27 YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNIIHIY 123          
The following BLAST results are available for this feature:
BLAST of CF417268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TMM93_BOVIN8.879e-1743.48Transmembrane protein 93 OS=Bos taurus GN=TMEM93 P... [more]
TMM93_MOUSE1.978e-1643.48Transmembrane protein 93 OS=Mus musculus GN=Tmem93... [more]
TMM93_HUMAN1.978e-1643.48Transmembrane protein 93 OS=Homo sapiens GN=TMEM93... [more]
TMM93_DANRE2.583e-1640.71Transmembrane protein 93 OS=Danio rerio GN=tmem93 ... [more]
TMM93_XENTR3.374e-1640.40Transmembrane protein 93 OS=Xenopus tropicalis GN=... [more]
TMM93_XENLA4.406e-1640.40Transmembrane protein 93 OS=Xenopus laevis GN=tmem... [more]
TMM93_DICDI4.406e-1639.18Transmembrane protein 93 homolog OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-198 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417268 ID=CF417268; Name=CF417268; organism=Citrus sinensis; type=EST; length=647bp
ACAAACAATAAAAACAAGGACTCGAGTCTCATTAATTCTCAGCAGCAAAG
TGTAGAAAGTAACTCGTGTTCTCCGATTTCGTGGGTGGAAGATATGGCTA
CTCACAGTGATTCAGTTGCTGGTAAGAAGTCCAATGACGTCTCGAATGAT
TTGCAAATATTCAATGCTGAGAATTTGCAGAGCAACATGAAAGTTATCTA
CTACAGCCGTACATTTTTGTCTATCATCGGAGGGGTCATTGCTGGAATTT
TGGGATTCACTGGCTTAATGGGGTTCGTATTTTATTTTCTCATCATGGCA
ATTACTTCAGTTTGTCTCATGGCCAAGGCAAAGTTTTCAGTTCATTCATA
CTTTGACTCATGGAATCGTATTCTACTCGATGGCTTTCTGGGTGGCCTTA
TGTCGTTCGTGCTGTTCTGGACATTTGCTTATGACATCGTGCATATATTC
TGAGGATGGAAGGAAAGCCGAGCTGCTTCTGTAGCTGCTCATTCTAACAC
ATACATGTTGCCTTGGTAGTTTCAAAATAGCGCCAGCCATTTGTACCCAT
TTCCAATTCATCTTAAATTTTCTTCTTCAATTTTCTCTTCCTTTGGCTAG
AGACAGTTTCGTTGTATTTTCTGTAGCTTAAAAACTGATGAAAGTTT
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