CF417269

Overview
NameCF417269
Unique NameCF417269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_BOVIN (Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.344e-54
Identity = 107/195 (54.87%), Postives = 135/195 (69.23%), Query Frame = 2
Query:   56 NFYYPPEWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            N YYPP++ P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  IQ  +     DD+ALN  LR + R ++K + EEE
Sbjct:    8 NKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRKRFREKKKAMQEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_HUMAN (Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.221e-54
Identity = 106/195 (54.36%), Postives = 135/195 (69.23%), Query Frame = 2
Query:   56 NFYYPPEWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            N YYPP++ P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +     DD+ALN  LR + R ++K + EEE
Sbjct:    8 NKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFALNSMLRRRFREKKKAIQEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_RAT (Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.906e-54
Identity = 106/198 (53.54%), Postives = 135/198 (68.18%), Query Frame = 2
Query:   47 RADNFYYPPEWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            +  N YYPP++ P + GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +     DD+ALN  LR   R ++K + EEE
Sbjct:    5 KGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_MOUSE (Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.163e-53
Identity = 105/198 (53.03%), Postives = 135/198 (68.18%), Query Frame = 2
Query:   47 RADNFYYPPEWTPNQ-GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            +  N YYPP++ P + GSLN++H  H LRERARKL QGIL+IRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +     DD+ALN  LR   R ++K + EEE
Sbjct:    5 KGQNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFALNSMLRRHFREKKKAMQEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_XENLA (Coiled-coil domain-containing protein 130 OS=Xenopus laevis GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.887e-52
Identity = 100/198 (50.51%), Postives = 135/198 (68.18%), Query Frame = 2
Query:   47 RADNFYYPPEWTP-NQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            +  N YYPP++ P   GSLN +   H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP +C+YVI+SGAQRK E +D++D E +     E++ +L +D  +RLEH   D  K + A P L ++Q +      DD+A+N  LR+K R ++K++ EEE
Sbjct:    5 KGTNKYYPPDFDPAKHGSLNGYRNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSELQEVQSA-WKDDFAINSLLRSKFREEKKQIKEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_DANRE (Coiled-coil domain-containing protein 130 homolog OS=Danio rerio GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.331e-49
Identity = 99/195 (50.77%), Postives = 132/195 (67.69%), Query Frame = 2
Query:   56 NFYYPPEWTP-NQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            N +YPP++ P   GS+N ++  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP  C+YVI+SGAQRK E +D+ + E +      E+ KL +D  Y+L+H   D +K + A P L ++Q    G   DD+ LN ALR K R+++K + EEE
Sbjct:    8 NKWYPPDFDPAKHGSINGYYKTHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQSG-WKDDFQLNSALRRKFRTEKKVIAEEE 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_DICDI (Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium discoideum GN=DDB_G0281599 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.835e-46
Identity = 89/204 (43.63%), Postives = 131/204 (64.22%), Query Frame = 2
Query:   47 RADNFYYPPEWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPA--------------DEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRK 616
            +A N YYPP+W P++GS+N++ GQH LR+RARK+DQGILIIRFEMPF++WC GC   I  GVRFNAEKK V  Y+++ I+SF MK   C +Q  IQ DPKN +Y +ISG +++ E+F+ ED+   ELP+              +      +D   +LE+++ D++K K+   +L ++Q I   R  +DY L+  +R   R ++K
Sbjct:    5 KATNKYYPPDWDPSKGSINQYRGQHHLRDRARKIDQGILIIRFEMPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKGKKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKK 205          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_DROME (Coiled-coil domain-containing protein 130 homolog OS=Drosophila melanogaster GN=CG15084 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.597e-45
Identity = 86/197 (43.65%), Postives = 124/197 (62.94%), Query Frame = 2
Query:   47 RADNFYYPPEWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFD-VEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEE 634
            +  N YYPP++ P +G LNKF G HALRERARK+  GI+IIRFEMP+NIWC GC + I  GVR+NAEK +VG YY+T ++ F MK   C +   IQTDP N +YVI+SGA+R+   +D +++ + +    + ++    D  Y+LEHQ  D +   +A P L ++   +     D Y  N  LRA+ R Q+K +  ++
Sbjct:    5 KGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQ 201          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CC130_CAEEL (Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis elegans GN=ZK1307.9 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.576e-42
Identity = 87/199 (43.72%), Postives = 124/199 (62.31%), Query Frame = 2
Query:   47 RADNFYYPPEWT-PNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEEA 637
            +  NFYYPP++      SLN +HG HALRERA+K+DQGIL+IRFEMPFNIWC GC++ +  GVR+NAEKK++G YY+T +  F MK   C +  VI+TDPKN +Y ++ G  R+   FD  D   +         KL +D  ++ EH+  D  K    E R+ +++ I + R  DD+  N  LRA+ R+++K + E  A
Sbjct:    5 KGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRA 202          
BLAST of CF417269 vs. ExPASy Swiss-Prot
Match: CWC16_SCHPO (Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc16 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 62/166 (37.35%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  140 RKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRXSDDYALNKALRAKLRSQRKRVTEEEA 637
            RK D+   +IRFEMPF +WC  C ++I +G RFNA KK++G+YY+TKIWSF++K   C + I + TDPKN EY++ SG +RK E  D+ +       A+ +    SD    LE Q    + +K     +  I   ++   SD +  ++ LR + R ++K   ++EA
Sbjct:   14 RKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQDINERPA---KAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFIYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEA 176          
The following BLAST results are available for this feature:
BLAST of CF417269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CC130_BOVIN2.344e-5454.87Coiled-coil domain-containing protein 130 OS=Bos t... [more]
CC130_HUMAN5.221e-5454.36Coiled-coil domain-containing protein 130 OS=Homo ... [more]
CC130_RAT8.906e-5453.54Coiled-coil domain-containing protein 130 OS=Rattu... [more]
CC130_MOUSE1.163e-5353.03Coiled-coil domain-containing protein 130 OS=Mus m... [more]
CC130_XENLA4.887e-5250.51Coiled-coil domain-containing protein 130 OS=Xenop... [more]
CC130_DANRE1.331e-4950.77Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DICDI6.835e-4643.63Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DROME2.597e-4543.65Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_CAEEL1.576e-4243.72Coiled-coil domain-containing protein 130 homolog ... [more]
CWC16_SCHPO1.870e-2737.35Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-199 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417269 ID=CF417269; Name=CF417269; organism=Citrus sinensis; type=EST; length=641bp
TTGATCGTGCTAACTAGAAGAAGAAATGTCTTCTCTTGCAGCTGCTAGAG
CAGATAATTTTTACTATCCTCCAGAATGGACCCCAAATCAGGGTTCTTTG
AACAAGTTTCATGGTCAACATGCTTTGAGGGAAAGAGCAAGAAAGTTAGA
TCAGGGAATTTTGATTATAAGGTTTGAGATGCCTTTCAATATATGGTGCG
GCGGATGCAATTCTATGATTGCAAAGGGTGTTCGTTTCAATGCTGAAAAG
AAGCAAGTGGGAAATTATTACTCTACAAAGATATGGAGTTTTACGATGAA
GTCTCCGTGCTGCAAACATCAGATTGTTATCCAGACAGATCCAAAGAATT
GTGAGTATGTAATTATTAGTGGAGCTCAGCGAAAGACAGAGGAGTTTGAC
GTTGAGGATGCAGAGACTCTTGAACTCCCTGCAGATGAGGAAAGGGGTAA
GCTTTCAGATCCATTTTATCGTCTTGAGCACCAGGAAGCTGACCTGCAGA
AGAAGAAAGAAGCTGAGCCAAGACTGGTGCAAATTCAGAGAATATCTGAT
GGCAGGNTTTCAGACGACTATGCACTAAACAAGGCTCTCAGGGCCAAACT
TCGATCTCAGAGGAAGAGAGTCACCGAAGAGGAGGCTGCTT
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