CF417271

Overview
NameCF417271
Unique NameCF417271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:143..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.087e-16
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 3
Query:  441 TGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            +GGP +WG CY      +  +C  +  +  PC PG  Y+ RG + I +NYNYGA GEAI
Sbjct:  164 SGGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAI 220          

HSP 2 Score: 37.3502 bits (85), Expect = 4.087e-16
Identity = 23/69 (33.33%), Postives = 32/69 (46.38%), Query Frame = 2
Query:  236 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCG--IWG 436
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS G   WG
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATSGGPYSWG 171          

HSP 3 Score: 25.409 bits (54), Expect = 4.087e-16
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFE 678
            G+ + ADLL +PE +  + T+AF+
Sbjct:  217 GEAIGADLLGNPELVATDPTVAFK 240          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.087e-16
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 3
Query:  441 TGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            +GGP +WG CY      +  +C  +  +  PC PG  Y+ RG + I +NYNYGA GEAI
Sbjct:  164 SGGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAI 220          

HSP 2 Score: 37.3502 bits (85), Expect = 4.087e-16
Identity = 23/69 (33.33%), Postives = 32/69 (46.38%), Query Frame = 2
Query:  236 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCG--IWG 436
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS G   WG
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATSGGPYSWG 171          

HSP 3 Score: 25.409 bits (54), Expect = 4.087e-16
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFE 678
            G+ + ADLL +PE +  + T+AF+
Sbjct:  217 GEAIGADLLGNPELVATDPTVAFK 240          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL   +      +  A  GP AWGLCY  E++P  SYCD +    +PC PG  Y+GRG I I WN+NYG  G+A+
Sbjct:  100 RKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDAT-DKQWPCYPGKSYHGRGPIQISWNFNYGPAGQAL 180          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.595e-14
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R +  A F   ++      +  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G AI
Sbjct:  137 RKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSA--TWPCASGKRYYGRGPMQLSWNYNYGLCGRAI 216          

HSP 2 Score: 26.1794 bits (56), Expect = 1.595e-14
Identity = 10/27 (37.04%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  601 LLGKPLRADLLSHPEYIEPNATLAFEA 681
            L G+ +  DLL++P+ +  +A +AF+A
Sbjct:  211 LCGRAIGVDLLNNPDLVANDAVIAFKA 237          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  369 IR*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            +R R  A FL  ++      +  A  GP AWG C+  E +PS +YC  S  Y  PC PG  YYGRG + + WNYNYG  GEA+
Sbjct:   52 VRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPLQLSWNYNYGPCGEAL 132          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++       G  A  GP AWG CYN E++P  SYC       YPC PG +Y+GRG + + WNYNYG  G AI
Sbjct:  103 RKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDP--NYPCAPGKQYFGRGPMQLSWNYNYGQCGRAI 183          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++       G  A  GP AWG CYN E++P  SYC       YPC PG +Y+GRG + + WNYNYG  G AI
Sbjct:  125 RKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDP--NYPCAPGKQYFGRGPMQLSWNYNYGQCGRAI 205          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.294e-13
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  GP +WG C+  E +P   YC  S  +  PC PG +YYGRG I + +N+NYG  G AI
Sbjct:  140 RKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEW--PCAPGRKYYGRGPIQLSFNFNYGPAGRAI 219          

HSP 2 Score: 25.409 bits (54), Expect = 1.294e-13
Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFE 678
            G+ +  DLLS+P+ +  +AT++F+
Sbjct:  216 GRAIGVDLLSNPDLVATDATVSFK 239          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-13
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R +  A F   ++      +  A  GP +WG C+  E +PS +YC  S  +  PC  G  YYGRG + + WNYNYG  G AI
Sbjct:  122 RKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEW--PCASGKSYYGRGPMQLSWNYNYGQCGRAI 201          

HSP 2 Score: 23.8682 bits (50), Expect = 1.684e-13
Identity = 8/25 (32.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  607 GKPLRADLLSHPEYIEPNATLAFEA 681
            G+ + +DLL++P+ +  +  +AF+A
Sbjct:  198 GRAIGSDLLNNPDLVSNDPVIAFKA 222          
BLAST of CF417271 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 3
Query:  372 R*RRFALFLPTSAARPLVXYGVATGGPLAWGLCYNHEMSPSQSYCDDSYXYTYPCTPGAEYYGRGAIPIYWNYNYGATGEAI 617
            R R  A FL  ++      +  A  GP AWG C+  E +PS +YC  S    +PC PG +YYGRG I I WNYNYG  G AI
Sbjct:  127 RKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYC--SATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI 205          
The following BLAST results are available for this feature:
BLAST of CF417271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHI7_ORYSJ4.087e-1644.07Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.087e-1644.07Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI10_ORYSJ9.079e-1545.12Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_ARATH1.595e-1439.02Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA2.023e-1444.58Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI2.642e-1445.78Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI2.642e-1445.78Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_ORYSJ1.294e-1340.24Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA1.684e-1339.02Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU3.814e-1346.34Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-201 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417271 ID=CF417271; Name=CF417271; organism=Citrus sinensis; type=EST; length=682bp
AACAGGTAGATCTGGTGAGAACGAGAAAATAAAGATGAAGAATGGCAGTG
TGGCAATGACACTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTG
GCAAATGGAGATGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAA
AAAAGTTTGCATAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCT
GTAACGAGACGATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTC
TTCTCGAAAAGGAACACGCCGGTGGCACATGCCGTGGGCTTCTGGGATTA
TCAGTCTTTCATTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTA
CCACCGGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCC
CACGTCGGCTGCAAGACCTCTTGTGGNATATGGGGTGGCCACTGGAGGAC
CATTGGCCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCA
TATTGTGATGATTCCTACNAATACACATATCCCTGCACCCCTGGAGCTGA
GTACTACGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAG
CTACTGGGGAAGCCATTGAGGGCGGATCTGTTGAGTCATCCTGAATACAT
TGAGCCGAATGCTACCCTTGCCTTTGAGGCTG
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