CF417326

Overview
NameCF417326
Unique NameCF417326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417326_ssr51 microsatellite CF417326_ssr51:51..62. BLAST: Citrus ESTs to Prunus persica proteins V1
CF417326_ssr63 microsatellite CF417326_ssr63:63..74. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig882 contig Csv1_Contig882:36..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.795e-74
Identity = 143/226 (63.27%), Postives = 165/226 (73.01%), Query Frame = 1
Query:    4 MATLCTPTCVIFXXXXXXXXXXXXFKTLNTGTTISSSTTPFFGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            MA LC+ + VI               + +  ++ S   +PF GFS+ +    S       N+KR  +V+C        SLVP NQRWMF++ E NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM  ETFDQLQ RIPERI+EHAVRGMLPKGRLGR LF HLK
Sbjct:    1 MAVLCSSSTVIL-------------SSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLK 213          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.343e-68
Identity = 134/194 (69.07%), Postives = 152/194 (78.35%), Query Frame = 1
Query:   97 TTISSSTTPFFGFSVA-SAKSTSPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            T + S   P    +VA SA+ ++  +TK     R  K    +  ++  VP +QRWMF   E  GPDIWN TWYPK+ADH  +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRLGR LF HLK
Sbjct:   29 TPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLK 222          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.160e-42
Identity = 83/112 (74.11%), Postives = 97/112 (86.61%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK  LG++LFT LK
Sbjct:   13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_ANASP (50S ribosomal protein L13 OS=Anabaena sp. (strain PCC 7120) GN=rplM PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.284e-42
Identity = 82/112 (73.21%), Postives = 97/112 (86.61%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK  LG++LFT LK
Sbjct:   13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_FREDI (50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 79/112 (70.54%), Postives = 96/112 (85.71%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WY+VDATD+ LGRLAS IA+ +RGK  A YTP +D G +VIV+NAEK+AV+GKKRTQK+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK  LG++LFT LK
Sbjct:   13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSLGKQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.948e-41
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 1
Query:  277 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            N T+ P        +  WYVVDAT++ LGRLA+ IA+ +RGK    YTPS+D G +VIVVNAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK  LGR LFT LK
Sbjct:    2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVVNAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRNLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.185e-40
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 1
Query:  328 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            WYV+DA D+ LGRLA+ IA  +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+YRRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK  LGR+LFT LK
Sbjct:   19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLK 127          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_MICAN (50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            ++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR QK+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK  LGR+LFT LK
Sbjct:   13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAA5 (50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142) GN=rplM PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39
Identity = 77/112 (68.75%), Postives = 94/112 (83.93%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WYV+DATD+ LGRLA  +A  +RGKN  TYTP +D G +VI++NA+KVAV+G+K TQK+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK  LGR+LFT LK
Sbjct:   13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQKLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLK 124          
BLAST of CF417326 vs. ExPASy Swiss-Prot
Match: RL13_CYAP8 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801) GN=rplM PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 76/112 (67.86%), Postives = 94/112 (83.93%), Query Frame = 1
Query:  319 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLK 654
            D+ WYV+DA D+ LGRLAS +A  +RGKN  T+TP +D G +VI+VNAEKV V+GKK +QK+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK  LGR+LFT LK
Sbjct:   13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQKLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSLGRKLFTKLK 124          
The following BLAST results are available for this feature:
BLAST of CF417326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK13_ARATH2.795e-7463.2750S ribosomal protein L13, chloroplastic OS=Arabid... [more]
RK13_SPIOL1.343e-6869.0750S ribosomal protein L13, chloroplastic OS=Spinac... [more]
RL13_ANAVT2.160e-4274.1150S ribosomal protein L13 OS=Anabaena variabilis (... [more]
RL13_ANASP6.284e-4273.2150S ribosomal protein L13 OS=Anabaena sp. (strain ... [more]
RL13_FREDI3.119e-4170.5450S ribosomal protein L13 OS=Fremyella diplosiphon... [more]
RL13_CYAP46.948e-4167.4650S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_THEEB1.185e-4074.3150S ribosomal protein L13 OS=Thermosynechococcus e... [more]
RL13_MICAN1.003e-3969.6450S ribosomal protein L13 OS=Microcystis aeruginos... [more]
RL13_CYAA51.711e-3968.7550S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_CYAP82.235e-3967.8650S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-256 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417326 ID=CF417326; Name=CF417326; organism=Citrus sinensis; type=EST; length=654bp
AAAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACA
ATCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTA
CCATCAGTTCTAGCACAACCCCATTCTTCGGGTTCTCTGTTGCTTCAGCG
AAATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTG
CCAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGT
CCGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCT
GCTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGA
TAAGATTCTTGGGAGACTTGCATCCACTATTGCCATTCATATTCGTGGAA
AGAATCTCGCCACCTACACTCCTAGTGTGGACATGGGAGCATATGTGATT
GTGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAA
GATCTACAGAAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACAT
TTGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTT
CGCGGAATGCTTCCGAAAGGGAGGCTTGGTAGAGAACTGTTCACCCATCT
AAAG
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