CF417329

Overview
NameCF417329
Unique NameCF417329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1297 contig Csv1_Contig1297:8..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_BOVIN (Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  PSF+LK+ VL
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRNIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTASSFWLMPSFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_RAT (Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_MOUSE (Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            G      D+  F+S VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N F DT  F     W     W  P+F+LK+ VL
Sbjct:    2 GEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDTSIF--NQTWTANSFWLMPAFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_PONAB (Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_HUMAN (Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            G      D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL
Sbjct:    2 GEIKVSPDYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_MACFA (Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 71/159 (44.65%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  193 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            D+  F+  VPL KI +    +K W  YD GP+ +  PLI LP  +GTA+V+++QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV SL+L N+F DT  F     W     W  P+F+LK+ VL
Sbjct:    9 DYNWFRGTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFRQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKKIVL 165          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_XENLA (Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 73/169 (43.20%), Postives = 103/169 (60.95%), Query Frame = 1
Query:  172 GVFSAPGDFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVLTGN 657
            G      D+  F+S VPL +I +    +K W  YD GP+ V  P+I LP  +GTA+V++ QI+AL+  GYRVI++  P  W+H E+   F K LD + +  +HL+G SLGGFLAQ FA+  H+  RV+SL+L N+F DT  F     W     W  P+F+LK+ +L GN
Sbjct:    2 GAIKISPDYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPRSVRCPIIYLPPVSGTADVFFHQILALTGWGYRVIALQYPVYWDHLEFCDGFRKLLDDLHLDKVHLFGASLGGFLAQKFAEYTHKSPRVQSLILCNSFSDTSIF--NQTWTANSFWLMPAFMLKK-ILLGN 167          
BLAST of CF417329 vs. ExPASy Swiss-Prot
Match: SPG21_DANRE (Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  193 DFVHFKSQVPLYKIPIG---TKQWRYYDFGPKVVP-PLICLPGTAGTAEVYYKQIMALSMKGYRVISVDIPRVWNHHEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQ--HRPRRVRSLVLSNTFLDTHSFAAAMPWAPIVSW-TPSFLLKRYVL 648
            D+  F+S VPL +I +    +K W  YD GPK +  P+I LP  +GTAEV+++Q++ALS  GYRVIS+  P  W+  E+   F K LD + +  +HL+G SLGGFLAQ FA+  ++  RV SLVL N+F DT  F     W     W  PSF+LK+ VL
Sbjct:    9 DYNWFRSTVPLKRIIVDDDDSKVWSLYDAGPKSIRCPIIFLPPVSGTAEVFFQQVLALSGWGYRVISLQYPVYWDLLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEVTYKSPRVHSLVLCNSFSDTSIF--NQTWTANSFWLMPSFMLKKIVL 165          
The following BLAST results are available for this feature:
BLAST of CF417329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPG21_BOVIN2.403e-2944.58Maspardin OS=Bos taurus GN=SPG21 PE=2 SV=1[more]
SPG21_RAT9.132e-2943.98Maspardin OS=Rattus norvegicus GN=Spg21 PE=2 SV=1[more]
SPG21_MOUSE9.132e-2943.98Maspardin OS=Mus musculus GN=Spg21 PE=1 SV=1[more]
SPG21_PONAB1.558e-2843.37Maspardin OS=Pongo abelii GN=SPG21 PE=2 SV=1[more]
SPG21_HUMAN1.558e-2843.37Maspardin OS=Homo sapiens GN=SPG21 PE=1 SV=1[more]
SPG21_MACFA2.034e-2844.65Maspardin OS=Macaca fascicularis GN=SPG21 PE=2 SV=... [more]
SPG21_XENLA2.657e-2843.20Maspardin OS=Xenopus laevis GN=spg21 PE=2 SV=1[more]
SPG21_DANRE4.532e-2845.91Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-259 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417329 ID=CF417329; Name=CF417329; organism=Citrus sinensis; type=EST; length=707bp
AATCAAGTGAGAGGAAGAGGGGAAAAAAAAATAAAGCGTGTTAATTTTTC
TTTCAGTGATTGAATGATTGATCAATCTTTTATAAGATTGGAATAATCGA
TTTTTATTTTTTTTTGAAAAGGGAATAATCGAATTTGAATGCATGTGTAG
GCTCAAAAGTCGACAATGAAAGGCGTCTTCTCGGCGCCCGGAGATTTTGT
CCACTTCAAGTCTCAGGTCCCTCTTTACAAGATCCCTATTGGCACAAAGC
AGTGGCGATATTATGATTTTGGCCCAAAAGTAGTTCCTCCACTTATTTGT
CTTCCTGGAACGGCAGGGACAGCAGAAGTCTACTACAAGCAGATCATGGC
TTTGTCCATGAAGGGTTACCGGGTGATTTCTGTTGATATTCCACGTGTAT
GGAATCATCATGAGTGGATTCAAGCATTTGAAAAATTCCTTGATGCCATT
GATGTTCATCATATACACCTTTACGGCACATCACTTGGAGGCTTCCTAGC
ACAACTTTTTGCTCAGCATCGCCCAAGACGAGTTAGATCATTAGTCTTAT
CAAATACATTTTTGGATACGCATAGTTTCGCAGCTGCAATGCCATGGGCT
CCCATTGTTAGTTGGACACCTTCTTTTTTGCTTAAACGATACGTCTTAAC
AGGGAATTCATGATGGCCCTCATGAACCATTTATTGCAGATTCTGTGGGA
CTTTGTT
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